Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_C05
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    72   8e-14
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    34   0.025
SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo...    29   0.55 
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.2  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    27   2.9  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    26   6.7  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    26   6.7  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   6.7  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    25   8.9  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 72.1 bits (169), Expect = 8e-14
 Identities = 38/95 (40%), Positives = 58/95 (61%)
 Frame = +2

Query: 170 EYXQFLEDLQKGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLY 349
           ++  FL DL +    +CRY ++DFE+ +  +G      + K+  +SW PD A +K KM+Y
Sbjct: 49  DFDTFLGDLPEK---DCRYAIYDFEF-NLGEGV-----RNKIIFISWSPDVAPIKSKMVY 99

Query: 350 SSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 454
           SSS D L+++  G+   IQATD SE + E V EK+
Sbjct: 100 SSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEKV 134


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 33.9 bits (74), Expect = 0.025
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = +2

Query: 278 SKKQKLFLMSWCPDTAKVKKKMLYSSS 358
           SKK  L L+S+ P+ A V++KMLY+SS
Sbjct: 76  SKKNLLQLISYVPENANVRRKMLYASS 102



 Score = 28.7 bits (61), Expect = 0.96
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
 Frame = +2

Query: 290 KLFLMSWCPDTAKVKKKMLYSSS----FDALKKSL-VGVQKYIQATDLSEASQEAV 442
           K+  +  CP  A VK +M+YSSS     D++K  L + +   I++ D ++ +++ +
Sbjct: 244 KILFIYICPMQATVKHRMVYSSSKLGLLDSIKAELGIVIDGKIESNDAADITEKEI 299


>SPAC17H9.11 |||cofilin/tropomyosin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +2

Query: 266 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 445
           T++      LF++ W P        M+Y+S+     + +  V K  +A D  + + EAV+
Sbjct: 79  TTDGRLSTPLFMIYWRPSATPNDLSMIYASA-KVWFQDVSQVHKVFEARDSEDITSEAVD 137

Query: 446 EKL 454
           E L
Sbjct: 138 EFL 140


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 24/95 (25%), Positives = 36/95 (37%)
 Frame = +2

Query: 236 DFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATD 415
           +F+   Q   T  A+K     +    P T    K  + ++   A KK + G +KY    +
Sbjct: 120 NFKRRTQFAFTGRATKSNAGVMDVQSPSTMSTSKNNVRNAERPASKKPVFGSKKYFDVIN 179

Query: 416 LSEASQEAVEEKLRATDRQ*TAFTHELATKPNPLS 520
            S    +  E K R  DR  + FT         LS
Sbjct: 180 DSNVENKE-ETKDRNLDRALSKFTQSREKNEQNLS 213


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 356 SFDALKKSLVGVQKYIQATDLSEASQ 433
           S +AL++ L G + Y+Q+TD++  S+
Sbjct: 188 SLEALQEELEGFEDYVQSTDIAAMSK 213


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 675 CREA-VMRFGLKGGAAVVTIWVAHLCCXCL 761
           CR A  +R G+K G  ++ I V  +CC  L
Sbjct: 7   CRSANTLRKGIKNGKLILKIIVNDVCCWVL 36


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 418 LGSVSGGRRREAPRHRSPINSIYTRARDE---TEPALRHSCPDDTRPRHH*PLSIITKEN 588
           LG   G ++ E+ R + P  S    +       EP +RHS     RP+ H   S +T+++
Sbjct: 20  LGEEDGRQKGESSRKKRPPLSRKNPSNVSFWSNEPIIRHSSVKTDRPQFHRADSTVTEQS 79


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = -2

Query: 309 HDIRKSFCFLLASDVPWHWCVYSKSNRPY-----LHSPVPPFCR 193
           HD+     +++ S   +H C  ++S  P+     LH+P+P  C+
Sbjct: 107 HDVASHPSYMVQSPTSYHACSNNQSPFPHSHHPPLHNPLPVSCQ 150


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
 Frame = -2

Query: 525 VSESGFGFVASSCVNAVYWRSVARSFSSTAS*DASERSVAWMYF*TPTR---DFFRASNE 355
           + E  +G ++ SCV+  YW +  +     A     +R +  + +  P++      R  N 
Sbjct: 56  LEEEQWGVLSGSCVDGTYWSAEEKELFFQAVARNGKRDLDLIAYSIPSKSAVQIERYINA 115

Query: 354 LEYNIFFLTLAVSGHHDIR-KSFCFLLASDVP 262
           LE  + +L      H D   +S C L   D+P
Sbjct: 116 LENELRWL----RNHVDASVRSQCLLKYEDIP 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,405
Number of Sequences: 5004
Number of extensions: 55443
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)