Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_C05
(763 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 83 3e-16
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 83 3e-16
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 66 3e-11
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 66 3e-11
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 64 1e-10
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 29 3.6
AC025723-3|AAK29935.1| 254|Caenorhabditis elegans Hypothetical ... 29 3.6
AC024801-11|AAN84814.2| 138|Caenorhabditis elegans Hypothetical... 29 3.6
Z48717-10|CAA88612.2| 423|Caenorhabditis elegans Hypothetical p... 28 8.3
Z48584-9|CAA88478.2| 423|Caenorhabditis elegans Hypothetical pr... 28 8.3
AC024792-3|AAF60684.2| 388|Caenorhabditis elegans Hypothetical ... 28 8.3
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 82.6 bits (195), Expect = 3e-16
Identities = 44/115 (38%), Positives = 70/115 (60%), Gaps = 4/115 (3%)
Frame = +2
Query: 137 LXVEPVGXRNAEYXQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSW 310
+ VE VG +NA Y +F+E+++K ECRY D E T Q QG S K+ + +
Sbjct: 38 IVVEKVGEKNAPYAEFVEEMKKLVEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQY 97
Query: 311 CPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEASQEAVEEKLRATDR 469
CPD A V+++MLY+SS ALK SL G++ +QA+++S+ +++V+ L + R
Sbjct: 98 CPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 151
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 82.6 bits (195), Expect = 3e-16
Identities = 44/115 (38%), Positives = 70/115 (60%), Gaps = 4/115 (3%)
Frame = +2
Query: 137 LXVEPVGXRNAEYXQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSW 310
+ VE VG +NA Y +F+E+++K ECRY D E T Q QG S K+ + +
Sbjct: 38 IVVEKVGEKNAPYAEFVEEMKKLVEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQY 97
Query: 311 CPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEASQEAVEEKLRATDR 469
CPD A V+++MLY+SS ALK SL G++ +QA+++S+ +++V+ L + R
Sbjct: 98 CPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 151
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 66.1 bits (154), Expect = 3e-11
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Frame = +2
Query: 167 AEYXQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKK 340
A + +F+ED++ +CRY +FDF++T G SK K+ + CPD A +KKK
Sbjct: 61 AAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKK 119
Query: 341 MLYSSSFDALKKSL-VGVQKYIQATDLSEASQEAVEEKL 454
M+Y+SS A+K SL G Q +D SE S + + KL
Sbjct: 120 MVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 66.1 bits (154), Expect = 3e-11
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Frame = +2
Query: 167 AEYXQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKK 340
A + +F+ED++ +CRY +FDF++T G SK K+ + CPD A +KKK
Sbjct: 61 AAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKK 119
Query: 341 MLYSSSFDALKKSL-VGVQKYIQATDLSEASQEAVEEKL 454
M+Y+SS A+K SL G Q +D SE S + + KL
Sbjct: 120 MVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 63.7 bits (148), Expect = 1e-10
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Frame = +2
Query: 167 AEYXQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKK 340
A + +F+ED++ +CRY +FDF++T G SK K+ + CPD A +KKK
Sbjct: 61 AAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKK 119
Query: 341 MLYSSSFDALKKSL-VGVQKYIQATDLSEASQE 436
M+Y+SS A+K SL G Q +D SE S +
Sbjct: 120 MVYASSAAAIKTSLGTGKILQFQVSDESEMSHK 152
Score = 47.6 bits (108), Expect = 1e-05
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Frame = +2
Query: 254 QCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEA 427
Q SE S K+ L++ CPD A V+++MLY+SS ALK SL G++ +QA+++S+
Sbjct: 142 QVSDESEMSHKE---LLNNCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDL 197
Query: 428 SQEAVEEKLRATDR 469
+++V+ L + R
Sbjct: 198 DEKSVKSDLMSNQR 211
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
F32H2.5 protein.
Length = 2586
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 427 RFREVGRLDVLLNSDKGLFQSVERARVQHLLLD 329
RF E+G++D+ NS G+ + ++ V +LLD
Sbjct: 1828 RFLEIGKVDLSQNSSLGMAKLLDNVSVHGILLD 1860
>AC025723-3|AAK29935.1| 254|Caenorhabditis elegans Hypothetical
protein Y54F10AM.6 protein.
Length = 254
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1
Query: 538 RQGRSVGERVRFRRELVCKCC 476
R+GR G+ ++FR E VC+CC
Sbjct: 196 RKGR--GKNIKFRTEKVCRCC 214
>AC024801-11|AAN84814.2| 138|Caenorhabditis elegans Hypothetical
protein Y50D7A.10 protein.
Length = 138
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +2
Query: 257 CQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQE 436
C+ S+ + L+ +CP+ + + +MLY+ S + + V K + D+ E E
Sbjct: 74 CKKHSDERISYPMLLIYYCPNGSSPELQMLYAGSRNFIVNE-CHVSKNTEIRDIDEIDDE 132
Query: 437 AVEEK 451
+E K
Sbjct: 133 LLESK 137
>Z48717-10|CAA88612.2| 423|Caenorhabditis elegans Hypothetical
protein ZK1321.4 protein.
Length = 423
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 243 SKSNRPYLHSPVPPFCRSSRNCXYSALRXPTGST 142
S N P HSP PPF S N Y+ ++ T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219
>Z48584-9|CAA88478.2| 423|Caenorhabditis elegans Hypothetical
protein ZK1321.4 protein.
Length = 423
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 243 SKSNRPYLHSPVPPFCRSSRNCXYSALRXPTGST 142
S N P HSP PPF S N Y+ ++ T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219
>AC024792-3|AAF60684.2| 388|Caenorhabditis elegans Hypothetical
protein Y48G1A.3 protein.
Length = 388
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 245 YTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLY 349
+ H G+ E + +F S PD+ K KKK+LY
Sbjct: 161 FIHSLCGSHEIHPVKIIFRFSKYPDSLKYKKKILY 195
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,800,240
Number of Sequences: 27780
Number of extensions: 347390
Number of successful extensions: 1081
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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