Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_C05
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   4.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.4  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.4  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 267 VPWHWCVYSKSNRPYLH 217
           +P HW VY + N P LH
Sbjct: 33  IPEHWLVYPEPN-PSLH 48


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 552 SWPRVVRAGVSESGFGFVASSCVNAVYWRSV 460
           +W      GV+  G G VAS   +A  W+S+
Sbjct: 907 TWSNSQVQGVAVPGSGIVASGQQHAGGWQSI 937


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = +2

Query: 440 VEEKLRATDRQ*TAFTHELATKPNPLSDTPALTTRGHDTTSRLVLLQRKTN-SINMIDFT 616
           + +K++ T          L  +   +   P +T  GH    +  LL    N SI   +F 
Sbjct: 117 ISKKIKKTMENKDITKRPLPNESQLIKRHPIVTIMGHVDHGKTTLLDALRNTSIAKSEF- 175

Query: 617 GGRTSCESA 643
           GG T C  A
Sbjct: 176 GGITQCIGA 184


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 12/52 (23%), Positives = 18/52 (34%)
 Frame = +3

Query: 39  VPVSAACNPTSXALNQAKSASLRCLLHPCPRNXXXXXRLAXATPNTXSSSRI 194
           VP      PT  A  Q   A + C     P+      + A  TP   +  ++
Sbjct: 677 VPPRWILEPTDKAFAQGSDARVECKADGFPKPQVTWKKAAGDTPGDYTDLKL 728


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 204 PFCRSSRNCXYSALR 160
           P+CR + +C YS  R
Sbjct: 9   PYCRRNFSCYYSLKR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,696
Number of Sequences: 438
Number of extensions: 4384
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)