Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_C04
         (578 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P27625 Cluster: DNA-directed RNA polymerase III subunit...    36   0.52 
UniRef50_UPI00015B5948 Cluster: PREDICTED: similar to transient ...    36   0.91 
UniRef50_A7RY18 Cluster: Predicted protein; n=1; Nematostella ve...    35   1.2  
UniRef50_UPI0000DC2038 Cluster: UPI0000DC2038 related cluster; n...    35   1.6  
UniRef50_UPI00006CA9FB Cluster: hypothetical protein TTHERM_0032...    33   4.9  
UniRef50_Q4YFH0 Cluster: Putative uncharacterized protein; n=1; ...    33   6.4  
UniRef50_UPI0000F1D639 Cluster: PREDICTED: similar to ring finge...    32   8.5  

>UniRef50_P27625 Cluster: DNA-directed RNA polymerase III subunit
           RPC1; n=6; Eukaryota|Rep: DNA-directed RNA polymerase
           III subunit RPC1 - Plasmodium falciparum
          Length = 2339

 Score = 36.3 bits (80), Expect = 0.52
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 470 NMTLQRCLSHFLMLQFNWNAQHVNYVTFYLHVVY-IAVYCFSL 345
           N  L  C  HF  ++ N+   H+ Y  + +H++Y I  YC SL
Sbjct: 92  NKKLINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCSSL 134


>UniRef50_UPI00015B5948 Cluster: PREDICTED: similar to transient
           receptor potential cation channel protein painless; n=1;
           Nasonia vitripennis|Rep: PREDICTED: similar to transient
           receptor potential cation channel protein painless -
           Nasonia vitripennis
          Length = 707

 Score = 35.5 bits (78), Expect = 0.91
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = -1

Query: 527 KNKLSQRCSTREVTSIL**NMTLQRCLSHFLMLQFNW----NAQHVNYVTFYLHVVY 369
           KN+ S  CS  E    +  N +L+  L H L+  F +      +HV YV F+L++VY
Sbjct: 258 KNRSSNPCSETEALLFIANNKSLRHLLKHPLLASFLYLKYLRIRHVLYVNFFLYLVY 314


>UniRef50_A7RY18 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 150

 Score = 35.1 bits (77), Expect = 1.2
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = -3

Query: 396 CHILFAC---CVHCCLLFFIADRLRTNIQCCQPFKLFKCSGLYKTNL*IT*VLILRFLRD 226
           C++LF C   C+ CC + FI    +  I+CC  + LF C   YK  +    +L + +   
Sbjct: 70  CYMLFICYKCCIECCYMLFIC--YKCCIECC--YMLFFC---YKCCIECCYMLFICYKCC 122

Query: 225 IVCIFLIFFWF 193
           I C +++F  +
Sbjct: 123 IECCYMLFICY 133



 Score = 34.7 bits (76), Expect = 1.6
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = -3

Query: 396 CHILF---ACCVHCCLLFFIADRLRTNIQCCQPFKLFKCSGLYKTNL*IT*VLILRFLRD 226
           C++LF    CC+ CC + FI    +  I+CC  + LF C   YK  +    +L   +   
Sbjct: 14  CYLLFFCYKCCIECCYMLFIC--YKCCIECC--YMLFFC---YKCCIECCYMLFFCYKCC 66

Query: 225 IVCIFLIFFWF 193
           I C +++F  +
Sbjct: 67  IECCYMLFICY 77



 Score = 34.3 bits (75), Expect = 2.1
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = -3

Query: 384 FACCVHCCLLFFIADRLRTNIQCCQPFKLFKCSGLYKTNL*IT*VLILRFLRDIVCIFLI 205
           + CC+ CC L F     +  I+CC  + LF C   YK  +    +L   +   I C +++
Sbjct: 7   YKCCIECCYLLFFC--YKCCIECC--YMLFIC---YKCCIECCYMLFFCYKCCIECCYML 59

Query: 204 FFWF 193
           FF +
Sbjct: 60  FFCY 63


>UniRef50_UPI0000DC2038 Cluster: UPI0000DC2038 related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DC2038 UniRef100 entry -
           Rattus norvegicus
          Length = 184

 Score = 34.7 bits (76), Expect = 1.6
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
 Frame = -3

Query: 414 CPA--RKLCHILFACCVHCCLLFFIADRLRTNIQCCQPFKL----FKCSGLYKTN 268
           CP+  R LC     CC HCC  +     +  + +CCQP +       C+G Y  N
Sbjct: 55  CPSSCRGLC-CAKGCCCHCCCCYCCCAPVACSSECCQPVQCQCIQVSCAGSYCVN 108


>UniRef50_UPI00006CA9FB Cluster: hypothetical protein
           TTHERM_00327160; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00327160 - Tetrahymena
           thermophila SB210
          Length = 396

 Score = 33.1 bits (72), Expect = 4.9
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = -2

Query: 574 FXLK*KNFIPKLSYSTRINYLKDVQQEK*RPFYNET*HYRDV 449
           + +K +NFI K  YS  IN LK +++EK + F N    YR V
Sbjct: 354 YSIKSQNFIEKF-YSDNINQLKCIEEEKSQIFKNRRCSYRQV 394


>UniRef50_Q4YFH0 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 83

 Score = 32.7 bits (71), Expect = 6.4
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 449 LSHFLMLQFNWNAQHVNYVTFYLHV-VYIAVYCF 351
           L  F ++  N    H++Y+TFYLH+ +YI +Y +
Sbjct: 42  LIFFFVVLCNIYCFHISYITFYLHIYIYIYIYIY 75


>UniRef50_UPI0000F1D639 Cluster: PREDICTED: similar to ring finger
           protein 31,; n=1; Danio rerio|Rep: PREDICTED: similar to
           ring finger protein 31, - Danio rerio
          Length = 848

 Score = 32.3 bits (70), Expect = 8.5
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -3

Query: 384 FACCVHCCL-LFFIADRLRTNIQCCQPFKLFKC 289
           F  C HCC  L   ADRLR +   C     FKC
Sbjct: 532 FRWCAHCCFGLLHEADRLRMDCPSCGKSTCFKC 564


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 502,360,017
Number of Sequences: 1657284
Number of extensions: 8938580
Number of successful extensions: 20493
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20471
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39987623712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)