Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_C04
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0204 - 15502331-15502459,15502875-15503129                       29   3.5  
11_06_0149 - 20636801-20637044,20637859-20639180                       28   4.7  
05_05_0200 - 23171803-23171906,23172304-23173951                       28   6.2  
01_02_0089 - 10997882-10997957,10998139-10998423,10998519-109985...    28   6.2  
02_04_0167 - 20510507-20510955,20511058-20511262                       27   8.2  

>12_02_0204 - 15502331-15502459,15502875-15503129
          Length = 127

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 51 ARTSCSPPSFSCYCWS 98
          ART CSPP    +CWS
Sbjct: 51 ARTPCSPPPARLHCWS 66


>11_06_0149 - 20636801-20637044,20637859-20639180
          Length = 521

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 109 AVFRFLKMDLCXQAKPTRRXSYEDGGLNEPKKNQKNTNNIS 231
           + F  L +      KP+RR     GG   PKK  K+ N ++
Sbjct: 3   SAFHSLLLPAIRNPKPSRRRGRGRGGSKRPKKTTKSKNRLA 43


>05_05_0200 - 23171803-23171906,23172304-23173951
          Length = 583

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = -1

Query: 425 FNWNAQHVNYVTFYLHVVYIAVYC----FSLPIVCVRISN 318
           F WN Q + +   Y+H+    ++C    F   +  V I+N
Sbjct: 350 FGWNMQRLGFGNMYVHIATFMLFCLAPFFIFNLAAVNINN 389


>01_02_0089 -
           10997882-10997957,10998139-10998423,10998519-10998589,
           10998685-10998761,10998858-10998963,10999062-10999189,
           10999291-10999423,11000005-11000133,11000220-11000375,
           11000770-11000846,11000938-11000998,11001249-11001383,
           11001642-11001765,11001852-11001917,11002010-11002112,
           11002603-11002652,11003795-11003895
          Length = 625

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 411 PARKLCHILFACCVHCCLLFFIADRLRTNIQCCQPFKLFKCS 286
           PA  L  +L  CC  CC +  + ++L   I CC   K  KCS
Sbjct: 5   PAHALL-VLLLCC-SCCSVRHLLEQLARRIPCCWDAK--KCS 42


>02_04_0167 - 20510507-20510955,20511058-20511262
          Length = 217

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 21  VPTPWLXHRXARTSCSPPSFS 83
           V  PW  H     SCSPPS S
Sbjct: 155 VSRPWQGHDVDHMSCSPPSIS 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,303,362
Number of Sequences: 37544
Number of extensions: 236044
Number of successful extensions: 444
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)