Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_C04
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50176-3|CAA90540.1|  196|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AC006717-1|AAY55883.2|  101|Caenorhabditis elegans Hypothetical ...    27   7.3  
Z66497-8|CAA91285.2|  433|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AJ745071-1|CAG32977.1|  433|Caenorhabditis elegans core alpha1,3...    27   9.6  

>Z50176-3|CAA90540.1|  196|Caenorhabditis elegans Hypothetical
           protein C09G1.3 protein.
          Length = 196

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 335 RRSAMKNNKQQCTQHANKM*HSLRAGHSN*TEALGNVKDISVMSCFIIKW 484
           RR+   N +Q+  +H +     +   +    E+L  V D   MSC +I W
Sbjct: 8   RRTKRNNEEQKTEEHQDVQETRILTYNQKNAESLQQVSDEVFMSCKVIDW 57


>Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical
           protein C33A12.11 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 226 YCLYFFDFFLVRL 188
           +CL+FFDF +VRL
Sbjct: 81  FCLFFFDFLMVRL 93


>AC006717-1|AAY55883.2|  101|Caenorhabditis elegans Hypothetical
           protein Y14H12A.2 protein.
          Length = 101

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 3   CLHIAVVPTPWLXHRXARTSCSPPSFSCYCWSLCGCCIP 119
           C+H+ V+    + +  +  SC    FS  CWS    CIP
Sbjct: 42  CVHLLVLHFVRICNISSFKSCFQTWFSDNCWSCTVYCIP 80


>Z66497-8|CAA91285.2|  433|Caenorhabditis elegans Hypothetical
           protein K08F8.3 protein.
          Length = 433

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 145 QAKPTRRXSYEDGGLNEPKKNQKNTNNISKKP 240
           + KP +R S+E+   N PKK   N N + K+P
Sbjct: 62  ELKPQQRPSFEE---NVPKKKTFNFNPVGKEP 90


>AJ745071-1|CAG32977.1|  433|Caenorhabditis elegans core
           alpha1,3-fucosyltransferase protein.
          Length = 433

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 145 QAKPTRRXSYEDGGLNEPKKNQKNTNNISKKP 240
           + KP +R S+E+   N PKK   N N + K+P
Sbjct: 62  ELKPQQRPSFEE---NVPKKKTFNFNPVGKEP 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,947,665
Number of Sequences: 27780
Number of extensions: 232036
Number of successful extensions: 652
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)