Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_C02
         (850 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   2.3  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   2.3  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   5.3  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   5.3  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   7.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.3  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 34  LCXPKRTLSKKKTNPKTSHNKISSSVFP 117
           L  P  T+    T+  ++ N+ SSSVFP
Sbjct: 37  LYTPSSTIDLYNTSSVSNFNESSSSVFP 64


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 34  LCXPKRTLSKKKTNPKTSHNKISSSVFP 117
           L  P  T+    T+  ++ N+ SSSVFP
Sbjct: 37  LYTPSSTIDLYNTSSVSNFNESSSSVFP 64


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/32 (21%), Positives = 13/32 (40%)
 Frame = +3

Query: 717 LPREVQVPAPRPHAFPRVPPEGPRRQTHQFTI 812
           +P  +  P P       +P   P+ + H F +
Sbjct: 209 VPSTIPPPPPEEDDDSNIPQNNPKNKQHNFNL 240


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 419 TLSPSPARKTACKSPLH 469
           TLS SP R+ A  +P H
Sbjct: 178 TLSQSPNRRRASSNPCH 194


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +3

Query: 726 EVQVPAPRPHAFPRVPPEGP 785
           E  +P   PH     PPE P
Sbjct: 407 EAPIPNVSPHYVTPTPPEAP 426


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 384 YHVVAGRRRSPGLSH 428
           YH ++G +  PG+ H
Sbjct: 286 YHALSGLKAPPGVEH 300


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,213
Number of Sequences: 336
Number of extensions: 4293
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)