Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_C02
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    28   1.5  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    28   1.5  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    28   1.9  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    27   3.4  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    27   3.4  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    27   4.4  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 249 GFKLKNRLKNEVFIDNKRAARDRAFQANPANRFTGNDGSCGIRVRY 386
           G K+ NR+     I+  RA R  + + N  N + G   S G+R  Y
Sbjct: 854 GVKMPNRVLTPEDINQVRAERSFSSRRNNGNSYRGGHQSYGVRRSY 899


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = +1

Query: 67  KTNPKTSHNKISSSVFPYT--KQKTDTDYVYSSCAQRNVVLVCKHCVSCVFMCPKHDGFF 240
           K  P  SH + +  + P    KQK +  +    C  R +  V K  + C   CP  + F 
Sbjct: 282 KKGPVFSHAEFAILLIPCVGNKQKYNMQWHEVHCLNRVIAQVKKSLILCYVQCPSIEDFN 341

Query: 241 K 243
           K
Sbjct: 342 K 342


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 142 DYVYSSCAQRNVVLVCKHCVSCVFMCPKHDGFFKAQDLNL 261
           D VY         +VC+ CVSC F  P H  FF ++ L L
Sbjct: 214 DVVYMDGGNLKSTIVCQ-CVSCPFQIPGH--FFISKSLAL 250


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 373 SESDTTSWPGAVAALDSLTVACEKDSMQVTITLAKRDPEINSIYDIFNG 519
           S+   T   GA+A L+ L V  E  +  +   L K++  I +++D+  G
Sbjct: 197 SQRQATKAAGAIAGLNVLRVVNEPTAAALAYGLDKKNDAIVAVFDLGGG 245


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/69 (21%), Positives = 26/69 (37%)
 Frame = +3

Query: 267 RLKNEVFIDNKRAARDRAFQANPANRFTGNDGSCGIRVRYHVVAGRRRSPGLSHRRLRER 446
           ++K E+ +D  R     A + +PA+  +      G +        RRR+P    +   E 
Sbjct: 126 KMKVEIILDPSRQLNSLAARVSPASNASATASKNGAKSSKRKTTRRRRTPNRPKKSAEEL 185

Query: 447 QHASHHYTG 473
                 Y G
Sbjct: 186 DKEMDDYFG 194


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 319 RSKQIPLTDLPGTTVAAVSESDTTSW 396
           +SK IP++ L GT + ++S+   + W
Sbjct: 449 KSKFIPISGLKGTNLTSISQEKLSQW 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,289,281
Number of Sequences: 5004
Number of extensions: 68430
Number of successful extensions: 226
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)