Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_C02
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 32 0.66
02_04_0288 + 21607289-21608251 32 0.66
06_01_0602 - 4342333-4342790,4342899-4345623 31 0.88
08_02_1615 + 28257275-28258428,28258523-28259144 31 1.5
01_05_0635 - 23847255-23847287,23847397-23848083,23848178-238485... 31 1.5
11_01_0759 + 6369149-6369231,6369765-6371556 29 3.5
08_02_0852 + 21877287-21877781 29 3.5
04_04_0052 + 22386553-22387506 29 6.2
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498... 28 8.2
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 31.9 bits (69), Expect = 0.66
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 380 QIPRRGRAPSQPWTLSPSPARKTACKSP 463
++ + R+P Q W+ SPSPARK SP
Sbjct: 84 RVKEQVRSPKQSWSRSPSPARKRESWSP 111
>02_04_0288 + 21607289-21608251
Length = 320
Score = 31.9 bits (69), Expect = 0.66
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 543 PKPSGVDDAIEYVVDAINFGVPFRQCNGDLHAVFLAGD 430
P P+G DD + + ++ P+ GDL VFLAGD
Sbjct: 122 PLPAGYDDCLAALRWVLSAADPWVAARGDLDRVFLAGD 159
>06_01_0602 - 4342333-4342790,4342899-4345623
Length = 1060
Score = 31.5 bits (68), Expect = 0.88
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +3
Query: 312 DRAFQANPANRFTGNDGSCGIRVRYHVVAGRRRSPGLSHRRLRERQ 449
D AF + P + F G+DG CG+R GRR G R L +R+
Sbjct: 606 DGAFASFPDDAFLGDDGLCGVRPGMARCGGRR---GEKRRVLHDRR 648
>08_02_1615 + 28257275-28258428,28258523-28259144
Length = 591
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +3
Query: 648 HS*ILQQHHSSAALEAGDRPGSRLPREVQVPAPRPHAFPRVPPEGPRRQT 797
HS +L HHS + D P + P PAP P+ PP P QT
Sbjct: 35 HSHLLHHHHSPQSHPQPDAPAAAAP---PPPAPLTPPPPKSPPPPPHIQT 81
>01_05_0635 -
23847255-23847287,23847397-23848083,23848178-23848540,
23848633-23848725,23848820-23848870,23849031-23849304,
23849766-23850595
Length = 776
Score = 30.7 bits (66), Expect = 1.5
Identities = 29/104 (27%), Positives = 41/104 (39%)
Frame = -3
Query: 659 YSTVPSSLSVDMVLQPFKGTVYCRSPRSATYSRRQLELLPSPAG*TMPLNMS*MLLISGS 480
YST S L V+ VLQ GTV+C A + L + SP M L + +
Sbjct: 274 YSTTTSDL-VEGVLQGRNGTVFCYGATGAGKTYTMLGTMESPG--VMVLAIKDLFTKVRQ 330
Query: 479 RFASVMVTCMLSFSQATVRESRAATAPGHDVVSDSDTAATVVPG 348
R + LS+ + R +PG ++ D TV G
Sbjct: 331 RSHDGNHSIQLSYLEVYNETVRDLLSPGRPLLLREDKQGTVAAG 374
>11_01_0759 + 6369149-6369231,6369765-6371556
Length = 624
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 352 GTTVAAVSESDTTSWPGAVAALDSLTVACEKDSMQV 459
G T+ VS PG D +T+ CEK M++
Sbjct: 423 GATITHVSSGKNCKSPGCTGTADGVTMLCEKHRMKM 458
>08_02_0852 + 21877287-21877781
Length = 164
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 386 PRRGRAPSQPWTLSPSPARKTACKSPLHWRNGTPKLIASTTYSMASSTPLGLG 544
P R APS+ +L PSPAR S + +L+ +++ +SS+P G G
Sbjct: 77 PARSGAPSRTASLGPSPARTVTRTSSA----ASSELLRTSSAGSSSSSPAGGG 125
>04_04_0052 + 22386553-22387506
Length = 317
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 543 PKPSGVDDAIEYVVDAINFGVPFRQCNGDLHAVFLAGD 430
P P+ +D+ + ++ P+ +GDL VFLAGD
Sbjct: 124 PLPAAYEDSAAALAWVLSAADPWLAVHGDLSRVFLAGD 161
>03_06_0565 +
34747278-34748066,34748170-34748406,34749777-34749869,
34751752-34751988,34752398-34752584,34752956-34753028,
34753145-34753289,34753670-34753779,34754127-34754258,
34754328-34754469,34754545-34754679,34756278-34756435,
34757327-34757401,34757505-34757643,34757838-34757952,
34758016-34758107,34758500-34758613
Length = 990
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +1
Query: 7 QIRRQNAWSLCXPKRTLSKKKTNPKTSHNKISSSVFPYTKQKTDT-DYVYSSCAQRNVVL 183
QIR Q + C P ++ + T P+ H + S +P+ +D D + V
Sbjct: 722 QIRSQGSRLSCVPSDHMASQVTLPRDLHGSVDFSKYPFRVYVSDLHDKMVGVSLFGMVTS 781
Query: 184 VCKHCVS 204
VCK S
Sbjct: 782 VCKASTS 788
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,375,028
Number of Sequences: 37544
Number of extensions: 495599
Number of successful extensions: 1890
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1886
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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