Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B24
         (824 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5HNF3 Cluster: Cell wall surface anchor family protein...    36   0.93 
UniRef50_Q4DTV1 Cluster: Putative uncharacterized protein; n=2; ...    35   2.8  
UniRef50_Q4AJ55 Cluster: Glycosyl transferase, group 1; n=1; Chl...    33   8.7  

>UniRef50_Q5HNF3 Cluster: Cell wall surface anchor family protein;
            n=3; cellular organisms|Rep: Cell wall surface anchor
            family protein - Staphylococcus epidermidis (strain ATCC
            35984 / RP62A)
          Length = 3692

 Score = 36.3 bits (80), Expect = 0.93
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +1

Query: 229  NQSVVAEALAKTRKAVAESKANFTKSRSYSKQEHSNSGARSKTLERANTVQPTVSPKQN 405
            N     E  A+ RK V ++K     + + S  E   +GA++  LE+ N +QP+   K N
Sbjct: 1879 NNDATDEEKAEARKLVEKAKIEAKSNITNSDTEREVNGAKTNGLEKINNIQPSTQTKTN 1937


>UniRef50_Q4DTV1 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 2066

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +1

Query: 541 VRKSNESLNSKAVKTCRQILVRSLSTSNKLDQ 636
           + +SNE L S A  TCR I+VR L+ + K+D+
Sbjct: 878 IDQSNEILESDAFSTCRDIVVRILNLNRKIDE 909


>UniRef50_Q4AJ55 Cluster: Glycosyl transferase, group 1; n=1;
           Chlorobium phaeobacteroides BS1|Rep: Glycosyl
           transferase, group 1 - Chlorobium phaeobacteroides BS1
          Length = 362

 Score = 33.1 bits (72), Expect = 8.7
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -3

Query: 261 FRQRLRHNTLIWSRRHRRWAFQFVVLHRLSVCLD---HEHN*KRRHSDNTIIKVL 106
           FR+RLR    +    H  W F +V L  L + LD    EHN   R     +++VL
Sbjct: 75  FRERLRRGERLIVHAHLTWPFYYVALASLFLSLDIVYTEHNTSNRRRGFRVLRVL 129


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.315    0.125    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,088,820
Number of Sequences: 1657284
Number of extensions: 10943842
Number of successful extensions: 35204
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35177
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 71324098314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)