Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B24
         (824 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   2.9  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    22   5.1  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    22   5.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   5.1  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   5.1  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   9.0  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 289 PSIPQRPSSFSPAPPPQ 239
           P  P    S +P+PPPQ
Sbjct: 218 PDSPNSKKSATPSPPPQ 234


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 78  AGINALLDTIVLLL*YCPSDASFN 149
           +G+ AL+   VL   + PSD S+N
Sbjct: 163 SGLFALITGNVLFYPFLPSDVSYN 186


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 78  AGINALLDTIVLLL*YCPSDASFN 149
           +G+ AL+   VL   + PSD S+N
Sbjct: 119 SGLFALITGNVLFYPFLPSDVSYN 142


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 342 TAIRVLLFRITTRLGKVGLRFRNGLP 265
           T +  L F  ++ L   GLR  NG+P
Sbjct: 119 TLLNTLTFHTSSNLTVSGLRCVNGIP 144


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 342 TAIRVLLFRITTRLGKVGLRFRNGLP 265
           T +  L F  ++ L   GLR  NG+P
Sbjct: 119 TLLNTLTFHTSSNLTVSGLRCVNGIP 144


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 277 QRPSSFSPAPPPQHFD 230
           QRP S S +PPP  ++
Sbjct: 271 QRPKSASLSPPPHVYN 286


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.315    0.125    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,076
Number of Sequences: 336
Number of extensions: 2859
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22621642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)