Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B24
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    27   2.4  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    26   7.5  

>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 299 PSLVVILNKSTRIAVRVLKLWKELTQCSRQSRPNKM 406
           P L V+L  S +  VR ++ W+ L Q  ++ R NK+
Sbjct: 102 PKLDVVLIHSPKWPVRRIESWRALLQHQKEGRINKI 137


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 318 RITTRLGKVGLRF-RNGLPRFRQRLRHNTLIWSRRH 214
           R   +L   GL F R G  RFR++  H +L  +RR+
Sbjct: 491 RPNVKLVSTGLEFGREGFTRFREKRFHPSLKLTRRY 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.125    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,781
Number of Sequences: 5004
Number of extensions: 46869
Number of successful extensions: 150
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)