Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B24
         (824 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1089 - 25987384-25987611,25988255-25988419,25988607-259886...    31   0.84 
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854...    28   7.8  
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117...    28   7.8  

>12_02_1089 -
           25987384-25987611,25988255-25988419,25988607-25988678,
           25989275-25989435,25989941-25989968
          Length = 217

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 295 FTKSRSYSKQEHSNSGARSKT--LERANTVQPTVSPKQNGLARVK 423
           F  S+S  K+EHS+S +R K   +   ++ QP+ SP   G +  K
Sbjct: 164 FLNSKSDDKEEHSDSSSRDKQDGVAPRDSGQPSTSPSSKGASSAK 208


>02_05_1273 +
           35381626-35382486,35382567-35382691,35384851-35385450,
           35385550-35385841,35386199-35386364,35386664-35386707,
           35386866-35386979,35387171-35387290,35387541-35387626,
           35388340-35388502
          Length = 856

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 267 PRFRQRLRHNTLIWSRRHRRW 205
           P + + LRHN   WS RHR W
Sbjct: 610 PLWHRELRHNN--WSTRHREW 628


>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
            1171148-1171398,1171442-1171687,1172220-1172415,
            1172796-1172876,1172966-1173169,1173671-1173880,
            1173953-1174174,1174437-1174480,1174974-1175052,
            1175066-1175227,1175337-1175564,1175786-1175815,
            1175905-1176273,1176356-1176571,1177202-1177683,
            1177930-1177975
          Length = 1352

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 23/79 (29%), Positives = 35/79 (44%)
 Frame = +1

Query: 115  YYSIVRVTPLLIMLMVQTNAQPMKNNKLKGXXXXXXXXNQSVVAEALAKTRKAVAESKAN 294
            + S +R T L     +Q   Q ++  K +               EA AK  KA AE+K  
Sbjct: 1055 FVSSMRCTSLHHFTALQKFLQLLEEKKKRILEKKEAPLKWEQKLEAAAKA-KADAEAKEK 1113

Query: 295  FTKSRSYSKQEHSNSGARS 351
              KSR + ++ HS+S + S
Sbjct: 1114 KLKSRKHRRRGHSSSDSES 1132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.125    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,795,189
Number of Sequences: 37544
Number of extensions: 310774
Number of successful extensions: 1216
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)