Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B21
         (790 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    25   0.69 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   2.1  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   2.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.1  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   2.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.7  

>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
 Frame = -1

Query: 403 SYSGSPVHHSICPVLL----PKCN 344
           S+ G P+HH I P +L    P CN
Sbjct: 91  SHHGPPIHHQIRPPILHDTQPMCN 114


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 403 SYSGSPVHHSICPVLL 356
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 403 SYSGSPVHHSICPVLL 356
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 224  DNPNSACGS*REPALKAIVTRVTGEPLSKAATN 126
            D+  + CG  + P LK +   + G P   + TN
Sbjct: 2666 DDFKNRCGCGKHPLLKTLNNELRGTPSDISVTN 2698



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 682  QNLKLTSSDASQAEASTYYGGELRKE 759
            Q+  L  ++ +   A+TY GGE  +E
Sbjct: 2070 QSFSLADNNQNGLNAATYGGGEAGEE 2095


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 403 SYSGSPVHHSICPVLL 356
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 205 QAELGLSHVLRSAAGLTTKNISSFL 279
           QAE  LS  +   A L T+N SS L
Sbjct: 259 QAEFTLSGQVMKYAALATENFSSLL 283


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.131    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,147
Number of Sequences: 336
Number of extensions: 3776
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)