Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_B20
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S... 169 5e-43
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr... 29 0.99
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 29 0.99
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 27 4.0
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 26 5.3
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 5.3
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.3
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 25 9.3
>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
Idi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 227
Score = 169 bits (410), Expect = 5e-43
Identities = 77/197 (39%), Positives = 118/197 (59%), Gaps = 8/197 (4%)
Frame = +1
Query: 205 LDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRRSSQKV 384
L +++C++VDE D + TK+ECH + LLHRAFS+F+F+++ + LQ+R+ +K+
Sbjct: 17 LMEEVCIVVDENDVPLRYGTKKECHLMENINKGLLHRAFSMFIFDEQNRLLLQQRAEEKI 76
Query: 385 TYPDYYTNACCSHPLYI--------DEKPEEIITAARRRMNHELGIPLDQLDPELFTFMT 540
T+P +TN CCSHPL + E E + AA+R++ HELGI + + F F+T
Sbjct: 77 TFPSLWTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRKLFHELGIQAKYIPKDKFQFLT 136
Query: 541 RVHYHDPGDGVWGEHEIDHILFFQSDVKVKPNSDEISEYCFVPKAEFNSFLPTLEGPITP 720
R+HY P G WGEHEID+ILFF+ V++ N +E+ Y +V E + TP
Sbjct: 137 RIHYLAPSTGAWGEHEIDYILFFKGKVELDINPNEVQAYKYVTMEELKEMFSDPQYGFTP 196
Query: 721 WFNMIRRHRLKLWWDNL 771
WF +I H + WW ++
Sbjct: 197 WFKLICEHFMFKWWQDV 213
>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 162
Score = 28.7 bits (61), Expect = 0.99
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +1
Query: 220 CLLVDEKDNFIGTATKRECHKVGPDGDVLLH 312
C++VDE DN I +A R PDGDV H
Sbjct: 34 CIIVDENDNVIMSAGNRV-----PDGDVTQH 59
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 28.7 bits (61), Expect = 0.99
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = +1
Query: 433 IDEKPEEIITAARRRMNHELGIPLDQLDPELFTFMTRVHYHDPGDGV--WGEHEIDHILF 606
++ +PE + ++ + I D P F FM V Y G+ I +IL+
Sbjct: 263 VESRPELNVGTIDFKVGKDYWIKEDPPKPARFVFMIDVSYEASSKGLPKVAAEAIRNILY 322
Query: 607 FQSDVKVKPNSDEISEYCFVPKAEFNSFLPTLEGP 711
V + PN +I+ CF F + P LE P
Sbjct: 323 --GPVPLDPNV-KIAIVCFDRSVNFFNLSPNLEQP 354
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -2
Query: 767 LSHQSFNRWRRIMLNHGVIGPSKVGRNELNSALGTKQYSEISSEFGLTLTSL 612
L+ SFN R + NH PSK +N +++ + SS F L LT +
Sbjct: 187 LNTSSFNT-RSPLRNHNFSNPSKSSKNGVHTINNMQSSPSPSSSFLLPLTQI 237
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 26.2 bits (55), Expect = 5.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 526 FTFMTRVHYHDPGDGVW 576
+TFMT H+ +P +GVW
Sbjct: 543 WTFMTVQHWAEPPEGVW 559
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -2
Query: 308 SSTSPSGPTL*HSLFVAVPMKLSFSSTSRQISLSKASAWANSRPS 174
SS+S S + S +VP+ S SS+ S S +S+ ++SRPS
Sbjct: 191 SSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPS 235
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -2
Query: 683 LNSALGTKQYSEISSEFGLTLTSLWKNSMWSISCSPHTP 567
L++ + Y++I +EFG W + + ISC+ P
Sbjct: 104 LDNTIVASTYTKIGAEFGKFSQVSWTATAYMISCTAFQP 142
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.4 bits (53), Expect = 9.3
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = -2
Query: 776 RCKLSHQSFNRWRRIMLNHGVIGPSKVGRNELNSALGTKQYSEISSEFGLTLT 618
R K S Q + + H + K+G+N+ S T EISS GL +T
Sbjct: 449 RIKRSIQDAKDFDDVFTEHESLELKKIGKNDEESLNTTNAVKEISSP-GLVIT 500
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,247,814
Number of Sequences: 5004
Number of extensions: 67119
Number of successful extensions: 194
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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