Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B19
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    56   6e-09
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    41   2e-04
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   3.0  

>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 56.0 bits (129), Expect = 6e-09
 Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 9/189 (4%)
 Frame = +1

Query: 223 DVLTKTRIGMTVNALRKSSKDDEVISLCKTLIKNWK---------KFLSTPNTTXXXXXX 375
           ++L +TR+G+ V  LR S  +++V    + ++K WK         K  +T ++T      
Sbjct: 41  ELLKETRLGLVVGKLR-SHPNEKVGEQAREIVKKWKADVSKGRPLKTTTTTSSTPSKHAD 99

Query: 376 XXXXXXXXXXXXXXXXXXXLPASFPPQSNTTDAVRLKCRELLTQALKAAGETSNACGSPX 555
                                +     + T D +R  C  L+  AL    + S++     
Sbjct: 100 VGSQAQKQVQKQSSSGQRTFKSDNVNVNVTDDKIRNNCIGLMYNALVIDSDESSSLIIAK 159

Query: 556 XXXXXXXXCIYAEFKNTDMRYKNRVRSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPE 735
                      A  K T   Y+NR+RS   NLKD  NP LR +     I+  RL+ MT  
Sbjct: 160 AKEIDAQVLARAAGK-TGSEYRNRMRSLYMNLKDKNNPKLRASVLRNEITPQRLSTMTSA 218

Query: 736 EMASDEMKK 762
           E+AS++ +K
Sbjct: 219 ELASEDRRK 227


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = +1

Query: 613 RYKNRVRSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEEMASDEMKKLXEK 774
           +Y+ + R+   NL D KNP  R       IS + L  ++ EEMA+ ++K L E+
Sbjct: 277 KYREKFRALRFNLVDDKNPAFRARVLKNEISFNDLVNLSSEEMANPDLKNLAEE 330


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 277  SKDDEVISLCKTLIKNWKKFLSTPN 351
            ++D E +S+    +K+ K FLSTPN
Sbjct: 981  NEDREALSVISEFLKDLKGFLSTPN 1005


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,392,806
Number of Sequences: 5004
Number of extensions: 35987
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)