Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B19
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608...    51   1e-06
06_03_0640 - 23059473-23060489,23060592-23060651,23063163-230632...    48   6e-06
07_01_0873 - 7257016-7257957,7260083-7260262                           45   8e-05
03_06_0445 - 33982018-33982965,33984308-33984463                       36   0.036
10_02_0100 + 5296783-5297568                                           35   0.083
10_02_0099 - 5295513-5296400                                           33   0.19 
10_05_0058 + 8662996-8663826                                           30   1.8  

>02_02_0011 +
           6083431-6085541,6086659-6086779,6087188-6087247,
           6087354-6088391,6089733-6089925,6090326-6090375,
           6090470-6090744,6091114-6091180,6091189-6091278,
           6091301-6091381,6091435-6091593
          Length = 1414

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 24/60 (40%), Positives = 35/60 (58%)
 Frame = +1

Query: 583 IYAEFKNTDMRYKNRVRSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEEMASDEMKK 762
           ++  F   + +YK + RS + NLKD  NP LR    +G I+  RL  MT EE+AS E+ +
Sbjct: 355 LFKLFGGVNKKYKEKGRSLLFNLKDKSNPELRERVLSGDITPDRLCSMTAEELASKELSE 414


>06_03_0640 -
           23059473-23060489,23060592-23060651,23063163-23063283,
           23063476-23065496
          Length = 1072

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 23/48 (47%), Positives = 30/48 (62%)
 Frame = +1

Query: 613 RYKNRVRSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEEMASDEM 756
           +YK + RS + NLKD  NP LR    +G I+  RL  MT EE+AS E+
Sbjct: 341 KYKEKGRSLLFNLKDKSNPVLRGRVLSGDITPKRLCSMTTEELASKEL 388


>07_01_0873 - 7257016-7257957,7260083-7260262
          Length = 373

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
 Frame = +1

Query: 526 ETSNACGSPXXXXXXXXXCIYAEFKNTDMRYKNRVRSRVANLKDPKNPTLRTNFFNGVIS 705
           E   AC  P          ++ +  N +   K R RS + NLKD  N   R     G + 
Sbjct: 230 EEVKAC-DPFRIAVMVECALFQKLGNFNGPNKQRYRSLMFNLKDDHNTDFRRRVLLGQVQ 288

Query: 706 ASRLAKMTPEEMASD----EMKKLXEK 774
             R+A +TP EMASD    E KK+ EK
Sbjct: 289 PERIADLTPTEMASDTRKLENKKIEEK 315


>03_06_0445 - 33982018-33982965,33984308-33984463
          Length = 367

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 21/55 (38%), Positives = 29/55 (52%)
 Frame = +1

Query: 616 YKNRVRSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEEMASDEMKKLXEKFI 780
           +K + RS + NL+   N   R     G +   RL  ++PEEMASD  +KL  K I
Sbjct: 253 HKAKYRSIMFNLRADNNTDFRRRVLLGQVRPERLVDISPEEMASD-ARKLENKQI 306


>10_02_0100 + 5296783-5297568
          Length = 261

 Score = 34.7 bits (76), Expect = 0.083
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 214 INLDVLTKTRIGMTVNALRKSSKDDEVISLCKTLIKNWK 330
           +  + L  +RIG T++ LR+    ++V  L   L KNWK
Sbjct: 96  MTFETLEASRIGKTISGLRRKHSSEKVRGLAAALYKNWK 134


>10_02_0099 - 5295513-5296400
          Length = 295

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 202 QTMAINLDVLTKTRIGMTVNALRKSSKDDEVISLCKTLIKNWK 330
           Q + +  + L  ++I  T++ LRK S  ++V  L   L K+WK
Sbjct: 117 QAVPMTFETLEASKISKTISGLRKHSSSEKVRRLAAALYKSWK 159


>10_05_0058 + 8662996-8663826
          Length = 276

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 202 QTMAINLDVLTKTRIGMTVNALRKSSKDDEVISLCKTLIKNWK 330
           Q + +  + L  ++IG  ++ LRK S  ++V  L   L K+WK
Sbjct: 115 QAVPMTFETLEASKIGKAISGLRKHS-SEQVRDLAAALYKSWK 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,411,381
Number of Sequences: 37544
Number of extensions: 204093
Number of successful extensions: 473
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)