Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B16
         (561 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    27   0.15 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    27   0.15 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.34 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   9.6  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 483 LYAKVLSLL*WCTRLGNGNLMVLLWNCLT 397
           +Y K LS L W  R GNG LM+  W  +T
Sbjct: 583 IYFKWLSFLSWF-RYGNGALMINQWENVT 610


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 483 LYAKVLSLL*WCTRLGNGNLMVLLWNCLT 397
           +Y K LS L W  R GNG LM+  W  +T
Sbjct: 583 IYFKWLSFLSWF-RYGNGALMINQWENVT 610


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 388 PSTGQTVPQQHHQIPIAQTCAPL 456
           PS G T P+   +IP+A   APL
Sbjct: 73  PSDGTTSPEPDPEIPVAPEPAPL 95


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 399 SNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCN 509
           S+  ++   D + PN      DL PS   G +  SC+
Sbjct: 136 SSPMSSGSYDPYSPNGKIGREDLSPSSLNGYSADSCD 172



 Score = 22.2 bits (45), Expect = 3.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 510 NYKK*VLGLLYAKVLSLL*WCTRLGNGN 427
           N +K   G ++AK+LS+L     LGN N
Sbjct: 494 NRRKPKPGTIFAKLLSVLTELRTLGNQN 521


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 19  LPSVVPRPSLPGSQLRLFSPVSNCRQISFLVF 114
           LP V P P  P     + +P + C   + L+F
Sbjct: 177 LPQVPPLPLPPIFPPTMINPSAICESAAQLIF 208


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,244
Number of Sequences: 336
Number of extensions: 2871
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13786212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)