Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B16
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...   122   4e-29
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...   122   4e-29
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   4.4  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    25   5.8  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    25   5.8  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   5.8  

>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  122 bits (294), Expect = 4e-29
 Identities = 68/142 (47%), Positives = 83/142 (58%), Gaps = 4/142 (2%)
 Frame = +2

Query: 89  VAKSRFWSFLXQLKQFKQPTGXIVXXXXXXXXXXXXXXHFGIWLRYESRSGVHNMYREYR 268
           VAKSR+W FL  + + K+ TG IV               FGIW+RY+SRSG HNMY+E+R
Sbjct: 35  VAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFR 94

Query: 269 DLSVGGAVTQCYRDMGARHRARAHSIQIIK-VEVIKAAACRRPQVKQFHNSTIRFPLPKR 445
           D +  GAV   Y DM ARHRAR  SI+I+K VEV K    RR  VKQ  N  ++FPLP R
Sbjct: 95  DTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHR 154

Query: 446 ---VHHYKRLNTFAYKRPSTYF 502
              V        FA  RPST++
Sbjct: 155 RTGVVGLAGKKVFAPHRPSTFY 176


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  122 bits (294), Expect = 4e-29
 Identities = 68/142 (47%), Positives = 83/142 (58%), Gaps = 4/142 (2%)
 Frame = +2

Query: 89  VAKSRFWSFLXQLKQFKQPTGXIVXXXXXXXXXXXXXXHFGIWLRYESRSGVHNMYREYR 268
           VAKSR+W FL  + + K+ TG IV               FGIW+RY+SRSG HNMY+E+R
Sbjct: 35  VAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFR 94

Query: 269 DLSVGGAVTQCYRDMGARHRARAHSIQIIK-VEVIKAAACRRPQVKQFHNSTIRFPLPKR 445
           D +  GAV   Y DM ARHRAR  SI+I+K VEV K    RR  VKQ  N  ++FPLP R
Sbjct: 95  DTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHR 154

Query: 446 ---VHHYKRLNTFAYKRPSTYF 502
              V        FA  RPST++
Sbjct: 155 RTGVVGLAGKKVFAPHRPSTFY 176


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 292 HSVL*RYGS*TQSPSSLNTDYQSGSNQGCCVSPSTGQTVPQQH 420
           HS   R G+ T +  +L +   + SN G   +  TG T+P  H
Sbjct: 99  HSASPRQGNNTGANGALFSQSTNSSNSGSYRNSVTGATLPNAH 141


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 433 WESDGAVVELFDLWTATRSSLDY 365
           WE  G  V+ +  W A   S DY
Sbjct: 145 WEKLGVTVDTYPYWDAKNRSFDY 167


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 314 PYLYSTE*QLHLHSGHGIHGTCCVHPNETHSV 219
           P L S+    +LHSG   HG    HP+   S+
Sbjct: 125 PSLLSSNATSYLHSGSSPHGNTSNHPSPISSL 156


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 313 GS*TQSPSSLNTDYQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAPLQET 465
           G+ +QSP+S +      SNQ   +SPST  +    HH    +   +P   T
Sbjct: 93  GNSSQSPTSPHP-----SNQPAMLSPSTAASQHHHHHSSSSSYAVSPTSPT 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,874
Number of Sequences: 5004
Number of extensions: 43877
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)