Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B16
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   155   2e-38
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    30   0.99 
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      30   0.99 
AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine re...    29   2.3  
AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine re...    27   9.2  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  155 bits (376), Expect = 2e-38
 Identities = 69/139 (49%), Positives = 94/139 (67%)
 Frame = +2

Query: 86  IVAKSRFWSFLXQLKQFKQPTGXIVXXXXXXXXXXXXXXHFGIWLRYESRSGVHNMYREY 265
           ++AKSRFW F+  L++ K+  G I+              ++G+WL+Y+SR+G HNMYREY
Sbjct: 41  VIAKSRFWYFVSMLRRVKKANGEILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREY 100

Query: 266 RDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKR 445
           RD +V GAVTQCYRDMGARHRA+A  I I+KV+ +KA   +R  +K FH++ IRFPLP R
Sbjct: 101 RDTTVAGAVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHR 160

Query: 446 VHHYKRLNTFAYKRPSTYF 502
           V   K L+ F   R +T+F
Sbjct: 161 VTKRKNLSVFTTARQNTHF 179


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
           protein R03E1.1 protein.
          Length = 1043

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 396 RSNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITIKPM 542
           R  SST  P+DS C  +  +TR   P  +R   ++     + H  + PM
Sbjct: 213 RHRSSTWTPTDSSCSGISPSTRVPPPIPSRAPVMSPVQSPLTHPPVAPM 261


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 396 RSNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITIKPM 542
           R  SST  P+DS C  +  +TR   P  +R   ++     + H  + PM
Sbjct: 213 RHRSSTWTPTDSSCSGISPSTRVPPPIPSRAPVMSPVQSPLTHPPVAPM 261


>AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine
           receptor, class x protein6 protein.
          Length = 293

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 33  PAPKPPWFSTAPFLSGLQLSPN 98
           PA +P WFS+ PFL  L  S N
Sbjct: 232 PADQPIWFSSVPFLVTLNCSSN 253


>AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine
           receptor, class x protein5 protein.
          Length = 306

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 33  PAPKPPWFSTAPFLSGLQLSPN 98
           P  +P WFS+ PFL  L  S N
Sbjct: 247 PPDQPIWFSSVPFLLTLNCSSN 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,173,930
Number of Sequences: 27780
Number of extensions: 269099
Number of successful extensions: 906
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)