Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_B15
(642 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 31 0.009
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.15
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.15
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 26 0.27
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 26 0.27
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 25 0.47
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 25 0.82
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 24 1.4
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 23 1.9
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 23 1.9
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 22 5.8
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 31.1 bits (67), Expect = 0.009
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 522 PSHVDIPYNILXTDKPLFYT-NNIISTVLYNFLPLTV 629
P+ DI + I+ K LFYT N I+ TVL +FL + V
Sbjct: 218 PTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLV 254
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.1 bits (57), Expect = 0.15
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 528 HVDIPYNILXTDKPLFYTNNII 593
++DI +NI K LFYT NII
Sbjct: 231 YLDITFNITMRRKTLFYTVNII 252
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.1 bits (57), Expect = 0.15
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 528 HVDIPYNILXTDKPLFYTNNII 593
++DI +NI K LFYT NII
Sbjct: 231 YLDITFNITMRRKTLFYTVNII 252
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 26.2 bits (55), Expect = 0.27
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 528 HVDIPYNILXTDKPLFYTNNII 593
++DI +NI K LFYT N+I
Sbjct: 227 YLDITFNITMRRKTLFYTVNLI 248
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 26.2 bits (55), Expect = 0.27
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 510 PARAPSHVDIPYNILXTDKPLFYT-NNIISTVLYNFLPLTV 629
P + DI +NI K LFYT N II V FL + V
Sbjct: 230 PCCTEPYSDITFNITMRRKTLFYTVNLIIPCVGITFLTVLV 270
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 25.4 bits (53), Expect = 0.47
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 534 DIPYNILXTDKPLFYT-NNIISTVLYNFLPLTV 629
DI +NI K LFYT N II V +FL + V
Sbjct: 225 DIVFNITLRRKTLFYTVNLIIPCVGISFLSVLV 257
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.82
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 534 DIPYNILXTDKPLFYT-NNIISTVLYNFLPLTV 629
DI Y I +P+FY N I+ +L N + L V
Sbjct: 202 DITYEIRLRRRPMFYVFNLILPCILINSVALLV 234
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 23.8 bits (49), Expect = 1.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 534 DIPYNILXTDKPLFYTNNII 593
DI +NI K LFYT N+I
Sbjct: 224 DIFFNITLRRKTLFYTVNLI 243
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 23.4 bits (48), Expect = 1.9
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 43 RETRWYKEEGREAAHTRRVPSHLQPSKERQRPGERMKIS 159
RE YK E + R + +ER+R ER IS
Sbjct: 45 REQNSYKNEKEYRKYRERSKERSRDKRERERSKERKIIS 83
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 23.4 bits (48), Expect = 1.9
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 43 RETRWYKEEGREAAHTRRVPSHLQPSKERQRPGERMKIS 159
RE YK E + R + +ER+R ER IS
Sbjct: 45 REQNSYKNEKEYRKYRERSKERSRDKRERERSKERKIIS 83
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 21.8 bits (44), Expect = 5.8
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 332 PEEGHGVXDITTRHIFSYKIVT 397
P EG + D RHI I+T
Sbjct: 364 PSEGEDISDYKFRHITEITILT 385
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,828
Number of Sequences: 438
Number of extensions: 3108
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -