Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_B14
(552 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41094 Cluster: 40S ribosomal protein S18; n=137; Eukar... 248 7e-65
UniRef50_P62269 Cluster: 40S ribosomal protein S18; n=58; Eukary... 235 4e-61
UniRef50_UPI00001C91B1 Cluster: PREDICTED: similar to ribosomal ... 158 7e-38
UniRef50_UPI00006CC3CE Cluster: ribosomal protein S13p/S18e cont... 149 6e-35
UniRef50_Q7QRY7 Cluster: GLP_549_8004_7540; n=1; Giardia lamblia... 124 2e-27
UniRef50_A2E0E1 Cluster: Ribosomal protein S13p/S18e, putative; ... 116 3e-25
UniRef50_P54019 Cluster: 30S ribosomal protein S13P; n=9; Euryar... 109 4e-23
UniRef50_Q8SRP2 Cluster: 40S ribosomal protein S18; n=1; Encepha... 106 3e-22
UniRef50_Q9HJD6 Cluster: 30S ribosomal protein S13P; n=4; Thermo... 105 5e-22
UniRef50_Q8TRR2 Cluster: 30S ribosomal protein S13P; n=4; Euryar... 105 7e-22
UniRef50_Q96YV7 Cluster: 30S ribosomal protein S13P; n=10; Archa... 103 4e-21
UniRef50_A0EBZ1 Cluster: Chromosome undetermined scaffold_89, wh... 98 1e-19
UniRef50_Q6LXN1 Cluster: 30S ribosomal protein S13P; n=4; Methan... 98 1e-19
UniRef50_Q0W1V6 Cluster: 30S ribosomal protein S13P; n=11; Archa... 97 2e-19
UniRef50_Q4V607 Cluster: IP07925p; n=3; Sophophora|Rep: IP07925p... 92 7e-18
UniRef50_A0RY01 Cluster: 30S ribosomal protein S13P; n=2; Thermo... 89 6e-17
UniRef50_Q00861 Cluster: 30S ribosomal protein S13P; n=5; Haloba... 87 3e-16
UniRef50_Q8H583 Cluster: Ribosomal protein S18-like; n=1; Oryza ... 85 1e-15
UniRef50_Q3LW54 Cluster: Ribosomal protein S18; n=1; Bigelowiell... 84 2e-15
UniRef50_A0SNY5 Cluster: SSU ribosomal protein S13AB; n=1; uncul... 76 5e-13
UniRef50_A4WM28 Cluster: 30S ribosomal protein S13P; n=2; Thermo... 75 1e-12
UniRef50_Q74M95 Cluster: 30S ribosomal protein S13P; n=1; Nanoar... 73 3e-12
UniRef50_Q00VP7 Cluster: Chromosome 14 contig 1, DNA sequence; n... 71 2e-11
UniRef50_UPI0001555DA0 Cluster: PREDICTED: similar to olfactory ... 60 3e-08
UniRef50_Q9X1I5 Cluster: 30S ribosomal protein S13; n=14; Bacter... 55 1e-06
UniRef50_Q7QRY8 Cluster: GLP_549_7513_8304; n=1; Giardia lamblia... 48 2e-04
UniRef50_Q601J1 Cluster: 30S ribosomal protein S13; n=3; Mycopla... 44 0.003
UniRef50_A6PT06 Cluster: Ribosomal protein S13; n=1; Victivallis... 42 0.007
UniRef50_A7PUB9 Cluster: Chromosome chr7 scaffold_31, whole geno... 39 0.067
UniRef50_O66486 Cluster: 30S ribosomal protein S13; n=28; cellul... 38 0.12
UniRef50_A0CSW0 Cluster: Chromosome undetermined scaffold_26, wh... 37 0.27
UniRef50_Q6G2Y7 Cluster: 30S ribosomal protein S13; n=20; cellul... 36 0.47
UniRef50_Q7PY55 Cluster: ENSANGP00000013280; n=4; Endopterygota|... 36 0.63
UniRef50_A6RYD3 Cluster: Putative uncharacterized protein; n=1; ... 36 0.63
UniRef50_P46747 Cluster: Mitochondrial ribosomal protein S13; n=... 36 0.83
UniRef50_Q5NQ42 Cluster: 30S ribosomal protein S13; n=107; cellu... 35 1.1
UniRef50_Q4WP11 Cluster: 40S ribosomal protein S13; n=5; Eurotio... 35 1.4
UniRef50_A1CXK9 Cluster: 40S ribosomal protein S13; n=7; Pezizom... 35 1.4
UniRef50_Q0QIP8 Cluster: Ribosomal protein S13; n=1; Oltmannsiel... 34 1.9
UniRef50_Q5B4R2 Cluster: Putative uncharacterized protein; n=1; ... 34 1.9
UniRef50_O59772 Cluster: Mitochondrial ribosomal protein subunit... 34 2.5
UniRef50_Q98JF7 Cluster: Mll1963 protein; n=1; Mesorhizobium lot... 33 3.3
UniRef50_A6LHC7 Cluster: Putative outer membrane protein, probab... 33 3.3
UniRef50_Q9TCB7 Cluster: Ribosomal protein S13; n=1; Nephroselmi... 33 3.3
UniRef50_O21258 Cluster: Ribosomal protein S13; n=1; Reclinomona... 33 4.4
UniRef50_Q6CFI9 Cluster: Yarrowia lipolytica chromosome B of str... 33 4.4
UniRef50_UPI0000DA3F53 Cluster: PREDICTED: similar to peptidylpr... 33 5.8
UniRef50_Q2AKW7 Cluster: Ribosomal protein S13; n=1; Bacillus we... 33 5.8
UniRef50_Q026Q4 Cluster: Trigger factor; n=1; Solibacter usitatu... 33 5.8
UniRef50_A6Q707 Cluster: Periplasmic nitrate reductase component... 33 5.8
UniRef50_A6LXE0 Cluster: Putative uncharacterized protein precur... 33 5.8
UniRef50_Q8W9S0 Cluster: Ribosomal protein S13; n=1; Mesostigma ... 33 5.8
UniRef50_O16005 Cluster: Rhodopsin; n=84; Fungi/Metazoa group|Re... 33 5.8
UniRef50_A1L3M1 Cluster: LOC100037042 protein; n=1; Xenopus laev... 32 7.7
UniRef50_A6CG73 Cluster: Putative uncharacterized protein; n=1; ... 32 7.7
UniRef50_A0DZU7 Cluster: Chromosome undetermined scaffold_70, wh... 32 7.7
UniRef50_Q6A6Q8 Cluster: 30S ribosomal protein S13; n=32; cellul... 32 7.7
UniRef50_P42732 Cluster: 30S ribosomal protein S13, chloroplast ... 32 7.7
>UniRef50_P41094 Cluster: 40S ribosomal protein S18; n=137;
Eukaryota|Rep: 40S ribosomal protein S18 - Drosophila
melanogaster (Fruit fly)
Length = 152
Score = 248 bits (607), Expect = 7e-65
Identities = 113/135 (83%), Positives = 126/135 (93%)
Frame = +2
Query: 68 MSLVIPSKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECT 247
MSLVIP KFQH LRIM+ +IDGKRKV A TAIKGVGRRYSNIVLKKAD+DL KRAGECT
Sbjct: 1 MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60
Query: 248 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 427
EEEV+K++TI+SNP QYK+P+WFLNRQKDI+DGKY QLTSSNLDSKLR+DLERLKKIR+H
Sbjct: 61 EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120
Query: 428 RGMRHYWGLRVRGQH 472
RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135
>UniRef50_P62269 Cluster: 40S ribosomal protein S18; n=58;
Eukaryota|Rep: 40S ribosomal protein S18 - Homo sapiens
(Human)
Length = 152
Score = 235 bits (576), Expect = 4e-61
Identities = 104/135 (77%), Positives = 124/135 (91%)
Frame = +2
Query: 68 MSLVIPSKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECT 247
MSLVIP KFQH LR+++ +IDG+RK+ FA TAIKGVGRRY+++VL+KADIDL KRAGE T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 248 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 427
E+EVE++ITIM NPRQYKIPDWFLNRQKD+ DGKYSQ+ ++ LD+KLREDLERLKKIRAH
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120
Query: 428 RGMRHYWGLRVRGQH 472
RG+RH+WGLRVRGQH
Sbjct: 121 RGLRHFWGLRVRGQH 135
>UniRef50_UPI00001C91B1 Cluster: PREDICTED: similar to ribosomal
protein S18; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S18 - Rattus norvegicus
Length = 170
Score = 158 bits (384), Expect = 7e-38
Identities = 76/134 (56%), Positives = 103/134 (76%)
Frame = +2
Query: 68 MSLVIPSKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECT 247
MSLVI K QH L++++ +ID +++ FA TA KG +RY+++VL+KA IDL K AGE T
Sbjct: 1 MSLVISEKSQHILQVLNTNIDEQQETAFAITATKGAEQRYAHVVLRKAGIDLTKMAGELT 60
Query: 248 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 427
E++VE++ITIM NPRQY+IP QK + DG+ SQ+ ++ LD+KLRE+LERLKKIRAH
Sbjct: 61 EDKVERVITIMQNPRQYEIP------QKGVRDGRCSQVPANGLDNKLREELERLKKIRAH 114
Query: 428 RGMRHYWGLRVRGQ 469
RG+RH+WGL V Q
Sbjct: 115 RGLRHFWGLHVHCQ 128
>UniRef50_UPI00006CC3CE Cluster: ribosomal protein S13p/S18e
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: ribosomal protein S13p/S18e containing
protein - Tetrahymena thermophila SB210
Length = 155
Score = 149 bits (360), Expect = 6e-35
Identities = 70/137 (51%), Positives = 97/137 (70%), Gaps = 2/137 (1%)
Frame = +2
Query: 68 MSLVIP--SKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGE 241
MS VI S F++ RI++ +IDGKR A T I+G+GRR++ I+ K ID + RAG
Sbjct: 1 MSFVIEKESDFKYIHRILNTNIDGKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGL 60
Query: 242 CTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIR 421
TE++ KI ++++P + IP W LNR D DGK Q+ S+ LD+K+REDLERLKKI+
Sbjct: 61 LTEDQCNKITDLIADPEAHGIPTWLLNRINDFKDGKNYQMASNTLDTKMREDLERLKKIK 120
Query: 422 AHRGMRHYWGLRVRGQH 472
+HRG+RH+WGL+VRGQH
Sbjct: 121 SHRGLRHFWGLKVRGQH 137
>UniRef50_Q7QRY7 Cluster: GLP_549_8004_7540; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_549_8004_7540 - Giardia lamblia ATCC
50803
Length = 154
Score = 124 bits (298), Expect = 2e-27
Identities = 57/134 (42%), Positives = 86/134 (64%)
Frame = +2
Query: 71 SLVIPSKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECTE 250
++V P+ ++ LR+ + +I GK + A IKG+GRR++N+ LKKA+ID+ KRAGE T
Sbjct: 3 TIVQPNDYRDLLRMFNTNIQGKVVLECALVGIKGIGRRFANVALKKANIDVHKRAGELTA 62
Query: 251 EEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHR 430
E + ++ ++ +P + IP W LNR D GK + + + S R DLERL+K R R
Sbjct: 63 AEEDALMKVLEDPLSHGIPAWMLNRNNDFESGKDMHILVNTIASTHRADLERLRKTRCER 122
Query: 431 GMRHYWGLRVRGQH 472
G+RH+ L+VRGQH
Sbjct: 123 GVRHHHNLKVRGQH 136
>UniRef50_A2E0E1 Cluster: Ribosomal protein S13p/S18e, putative;
n=3; Trichomonas vaginalis G3|Rep: Ribosomal protein
S13p/S18e, putative - Trichomonas vaginalis G3
Length = 155
Score = 116 bits (280), Expect = 3e-25
Identities = 51/129 (39%), Positives = 89/129 (68%)
Frame = +2
Query: 83 PSKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVE 262
P+ F+ +R++ ++DG+R + A T I G+GRR++ V+++A +D +RAG T +E E
Sbjct: 8 PAAFRDMVRMLSTNVDGRRPLYLALTNISGIGRRFAYAVVRRAGLDPLRRAGTLTPKEEE 67
Query: 263 KIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRH 442
I++I+ NP +++IP W LNR+ D G+ + +++L + +R ++ER+KK+R RG+RH
Sbjct: 68 LIVSIIQNPTEHQIPVWMLNRRFDRATGQNTHWVATDLSANIRAEIERMKKMRMKRGIRH 127
Query: 443 YWGLRVRGQ 469
GL+VRGQ
Sbjct: 128 GLGLKVRGQ 136
>UniRef50_P54019 Cluster: 30S ribosomal protein S13P; n=9;
Euryarchaeota|Rep: 30S ribosomal protein S13P -
Methanococcus jannaschii
Length = 150
Score = 109 bits (262), Expect = 4e-23
Identities = 51/128 (39%), Positives = 82/128 (64%)
Frame = +2
Query: 86 SKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 265
S+F++ +R+ +DG +K++ A I GVG + +++ A +D +K AG TEEEV+K
Sbjct: 4 SEFKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKK 63
Query: 266 IITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 445
I ++++P ++ IP W NR+KD V G+ + S+L +ED+ RLK+IR +RG+RH
Sbjct: 64 IEEVLADPAKFGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRIRCYRGIRHE 123
Query: 446 WGLRVRGQ 469
GL RGQ
Sbjct: 124 LGLPCRGQ 131
>UniRef50_Q8SRP2 Cluster: 40S ribosomal protein S18; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S18
- Encephalitozoon cuniculi
Length = 153
Score = 106 bits (255), Expect = 3e-22
Identities = 53/129 (41%), Positives = 83/129 (64%)
Frame = +2
Query: 83 PSKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVE 262
P++ Q+ +RI + +IDG +++ FA T I+G+G R + + K+ IDL KRAGE E+E++
Sbjct: 7 PAEVQYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMK 66
Query: 263 KIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRH 442
+I + +P IP+ ++N Q+DI+DG S L + LD+ LR +ER KK + R R
Sbjct: 67 RISDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYRL 126
Query: 443 YWGLRVRGQ 469
GL+VRGQ
Sbjct: 127 DVGLKVRGQ 135
>UniRef50_Q9HJD6 Cluster: 30S ribosomal protein S13P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S13P -
Thermoplasma acidophilum
Length = 171
Score = 105 bits (253), Expect = 5e-22
Identities = 45/126 (35%), Positives = 86/126 (68%)
Frame = +2
Query: 92 FQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKII 271
FQ+ +RI + ++G+R + A + +KG+G R ++ ++ D+ +DK+ GE EE++EK+
Sbjct: 28 FQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKLR 87
Query: 272 TIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWG 451
+ ++Y +P+W LN +++ V GK L S++L+ +++ED+ +KKIR+++G+RH G
Sbjct: 88 EYVE-AKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIRSYKGIRHEKG 146
Query: 452 LRVRGQ 469
+VRGQ
Sbjct: 147 KKVRGQ 152
>UniRef50_Q8TRR2 Cluster: 30S ribosomal protein S13P; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S13P -
Methanosarcina acetivorans
Length = 162
Score = 105 bits (252), Expect = 7e-22
Identities = 51/127 (40%), Positives = 76/127 (59%)
Frame = +2
Query: 89 KFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 268
+ +H +RIM+ + G + V +A T + GVGRR + ++ K A +D G EEEV K+
Sbjct: 19 ELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAKL 78
Query: 269 ITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYW 448
T + +P W LNRQKD+ G+ L +++ RED+ LKK+RA+RG+RH
Sbjct: 79 DTAIGKFEDI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHER 137
Query: 449 GLRVRGQ 469
GL+VRGQ
Sbjct: 138 GLKVRGQ 144
>UniRef50_Q96YV7 Cluster: 30S ribosomal protein S13P; n=10;
Archaea|Rep: 30S ribosomal protein S13P - Sulfolobus
tokodaii
Length = 172
Score = 103 bits (246), Expect = 4e-21
Identities = 46/127 (36%), Positives = 81/127 (63%)
Frame = +2
Query: 89 KFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 268
+F++ +R+ +DG KV +A +KG+G + ++ K +D D+R GE ++E+++KI
Sbjct: 6 QFKYIVRLFGQDVDGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKI 65
Query: 269 ITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYW 448
+++ + ++P+W NR+KD G L +S+L +R D+ER KKI++ RG+RH
Sbjct: 66 ENYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKIKSWRGVRHSL 125
Query: 449 GLRVRGQ 469
GL+VRGQ
Sbjct: 126 GLKVRGQ 132
>UniRef50_A0EBZ1 Cluster: Chromosome undetermined scaffold_89, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_89,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 193
Score = 97.9 bits (233), Expect = 1e-19
Identities = 52/134 (38%), Positives = 88/134 (65%), Gaps = 4/134 (2%)
Frame = +2
Query: 68 MSLVIPS--KFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGE 241
MSLV+ +F+ +RI++ ++DGK+++ + +IKG+GRR++ + K ++L KRAGE
Sbjct: 1 MSLVLEKADQFRQIIRILNTNVDGKQQMAYEIRSIKGIGRRFAIQICKVLRLNLTKRAGE 60
Query: 242 CTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIR 421
T+EE KI ++ QY +D+ +GK ++T++ L++KLREDLER+KKI+
Sbjct: 61 LTDEEAHKITEVIKMVPQY---------IRDLKNGKNYEVTTNELETKLREDLERIKKIK 111
Query: 422 AHRG--MRHYWGLR 457
+ +RH+WGLR
Sbjct: 112 YSQWLCLRHHWGLR 125
>UniRef50_Q6LXN1 Cluster: 30S ribosomal protein S13P; n=4;
Methanococcus|Rep: 30S ribosomal protein S13P -
Methanococcus maripaludis
Length = 149
Score = 97.9 bits (233), Expect = 1e-19
Identities = 43/128 (33%), Positives = 78/128 (60%)
Frame = +2
Query: 86 SKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 265
++F+H +RI ++GK + +A +KG+GR + V++ ++D ++AG +E+V K
Sbjct: 4 TEFKHRIRISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADEDVLK 63
Query: 266 IITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 445
I +++ +P + IP W NR+KD+ G L ++L ++ED+ +KKIR ++G+RH
Sbjct: 64 IESVLEDPATHGIPSWMFNRKKDVYSGLDKHLIETDLVLTVQEDITNMKKIRCYKGIRHE 123
Query: 446 WGLRVRGQ 469
L RGQ
Sbjct: 124 LRLPCRGQ 131
>UniRef50_Q0W1V6 Cluster: 30S ribosomal protein S13P; n=11;
Archaea|Rep: 30S ribosomal protein S13P - Uncultured
methanogenic archaeon RC-I
Length = 224
Score = 97.5 bits (232), Expect = 2e-19
Identities = 46/127 (36%), Positives = 78/127 (61%)
Frame = +2
Query: 89 KFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 268
+ ++ +RI + +DG + V FA T IKG+G R S I+ ++A +D G E+V+K+
Sbjct: 68 EIKYIVRIANTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDKL 127
Query: 269 ITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYW 448
++ N + +P W LNR++DI G+ L +L ++ED+ +KKIR+++G+RH
Sbjct: 128 RAVIDN-LEANVPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKIRSYKGIRHER 186
Query: 449 GLRVRGQ 469
G +VRGQ
Sbjct: 187 GQKVRGQ 193
>UniRef50_Q4V607 Cluster: IP07925p; n=3; Sophophora|Rep: IP07925p -
Drosophila melanogaster (Fruit fly)
Length = 246
Score = 92.3 bits (219), Expect = 7e-18
Identities = 40/48 (83%), Positives = 46/48 (95%)
Frame = +2
Query: 164 IKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIP 307
IKGVGRRYSNIVLKKAD+DL KRAGECTEEEV+K++TI+SNP QYK+P
Sbjct: 1 IKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVP 48
>UniRef50_A0RY01 Cluster: 30S ribosomal protein S13P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S13P -
Cenarchaeum symbiosum
Length = 227
Score = 89.0 bits (211), Expect = 6e-17
Identities = 40/127 (31%), Positives = 75/127 (59%)
Frame = +2
Query: 89 KFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 268
+++H +RI+ + G++K + I+G+G ++ +L ID + G T+E+V I
Sbjct: 50 EYKHIVRILGNDLPGEKKAVVGLRQIRGIGYGFATAILDVLKIDNNSNIGYLTDEQVASI 109
Query: 269 ITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYW 448
++ +P P WFLNR+KD+ G+ + +S+++ +R D+ER + + +G RH +
Sbjct: 110 EKLLQDPAGAGFPTWFLNRRKDLETGEDRHIFTSDIEFTVRNDVERERVSGSWKGYRHMF 169
Query: 449 GLRVRGQ 469
GL+VRGQ
Sbjct: 170 GLKVRGQ 176
>UniRef50_Q00861 Cluster: 30S ribosomal protein S13P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 177
Score = 87.0 bits (206), Expect = 3e-16
Identities = 41/125 (32%), Positives = 73/125 (58%)
Frame = +2
Query: 95 QHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIIT 274
++ +RI +DG + V A T + G+G R + I+ +KAD+D G+ ++ +E+++
Sbjct: 21 RYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIERVVE 80
Query: 275 IMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGL 454
+ N +P+W N QKD G+ + T ++L R+D+ R+K I ++RG+RH G
Sbjct: 81 RVENFAD-DVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMIDSYRGVRHKRGQ 139
Query: 455 RVRGQ 469
+VRGQ
Sbjct: 140 KVRGQ 144
>UniRef50_Q8H583 Cluster: Ribosomal protein S18-like; n=1; Oryza
sativa (japonica cultivar-group)|Rep: Ribosomal protein
S18-like - Oryza sativa subsp. japonica (Rice)
Length = 145
Score = 85.0 bits (201), Expect = 1e-15
Identities = 36/50 (72%), Positives = 44/50 (88%)
Frame = +2
Query: 323 RQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 472
++KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 79 QKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 128
>UniRef50_Q3LW54 Cluster: Ribosomal protein S18; n=1; Bigelowiella
natans|Rep: Ribosomal protein S18 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 159
Score = 84.2 bits (199), Expect = 2e-15
Identities = 41/123 (33%), Positives = 69/123 (56%)
Frame = +2
Query: 104 LRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMS 283
+RI +I+G F IKGVG R SN++ K D++ + + ++E+++ I
Sbjct: 19 IRIFDCNINGSLSCNFGLRNIKGVGIRMSNVLRKILKKDINYKLYNIEKADLEEVVNIFG 78
Query: 284 NPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVR 463
+ P W +NR+ D + G + S+ LDS L+ED++RL I+ ++G+RH L+ R
Sbjct: 79 KSSRKAFPSWLMNRRADFLTGDNLHVLSTVLDSALQEDIKRLVTIKNNKGLRHLSRLKTR 138
Query: 464 GQH 472
GQH
Sbjct: 139 GQH 141
>UniRef50_A0SNY5 Cluster: SSU ribosomal protein S13AB; n=1;
uncultured euryarchaeote ARMAN-2|Rep: SSU ribosomal
protein S13AB - uncultured euryarchaeote ARMAN-2
Length = 177
Score = 76.2 bits (179), Expect = 5e-13
Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 4/132 (3%)
Frame = +2
Query: 89 KFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSN----IVLKKADIDLDKRAGECTEEE 256
K +RI + I+G + A +KG+G+ S+ ++ K +ID G E +
Sbjct: 15 KAMSIVRIANKDINGGLNIQRALDQVKGIGQTMSHSLSYVIEHKFNIDPSTPIGSLNESQ 74
Query: 257 VEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGM 436
V ++ ++ +P +Y +P + LNR+ D+ GK L ++L +R+ + R +R RG
Sbjct: 75 VTQVEELIKDPHKYGVPKYLLNRRNDMDTGKDMHLIGNDLIFAVRQSINRDVTLRVWRGY 134
Query: 437 RHYWGLRVRGQH 472
RH +G +VRGQH
Sbjct: 135 RHQYGQKVRGQH 146
>UniRef50_A4WM28 Cluster: 30S ribosomal protein S13P; n=2;
Thermoproteaceae|Rep: 30S ribosomal protein S13P -
Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)
Length = 152
Score = 74.9 bits (176), Expect = 1e-12
Identities = 39/122 (31%), Positives = 67/122 (54%)
Frame = +2
Query: 104 LRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMS 283
+R+ ++G ++V +A I+G+G + + K ID G EE++ K+ +
Sbjct: 9 VRVGDTDLEGNKQVAYALAKIRGIGIASAYAICWKLGIDPHAVLGALPEEQINKLDWAVR 68
Query: 284 NPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVR 463
N + P WFLNR+KD G+ L S L + D++ +KK+++ +G+RH GL+VR
Sbjct: 69 NLHEVA-PAWFLNRRKDPETGRDMHLIGSELVLAAKRDVDLMKKLKSWKGIRHSLGLKVR 127
Query: 464 GQ 469
GQ
Sbjct: 128 GQ 129
>UniRef50_Q74M95 Cluster: 30S ribosomal protein S13P; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S13P -
Nanoarchaeum equitans
Length = 153
Score = 73.3 bits (172), Expect = 3e-12
Identities = 37/115 (32%), Positives = 61/115 (53%)
Frame = +2
Query: 125 IDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKI 304
+DG + + + GV +++ V ID ++ G ++EE+EK+ + NP +Y I
Sbjct: 21 LDGHKPIYVELRKVVGVNWMFAHAVCAALGIDKWRKIGSLSDEELEKLEDALRNPWKYGI 80
Query: 305 PDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 469
P W NR++D GK L ++ + D++R +I + RG RH GL VRGQ
Sbjct: 81 PSWLYNRRRDPETGKDLHLVGNDYKITMEFDIKREMQINSWRGYRHREGLPVRGQ 135
>UniRef50_Q00VP7 Cluster: Chromosome 14 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 14 contig 1, DNA
sequence - Ostreococcus tauri
Length = 272
Score = 70.5 bits (165), Expect = 2e-11
Identities = 42/135 (31%), Positives = 68/135 (50%)
Frame = -3
Query: 472 VLTTHTKAPVMSHPSVSANLLEPLQIFTEF*IQVGGGQLAVFTINNILLPI*EPVWYLIL 293
VLTT T APV+S SV +NLL+ L++ + +++ G L I I+L + EP+ L
Sbjct: 44 VLTTDTDAPVVSQTSVVSNLLQTLEVVAQLRVELVGHHLRELAILEIVLAVQEPIRNSEL 103
Query: 292 PRIRHDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPANTFDSRXRKHNLAFAIDVRMH 113
R+ HD F L L +I++ F + VG A+ D H+L ++V +
Sbjct: 104 SRVGHDHHQRFQLRGGELPGALPEIDLSLFAHQVGEAAADPLDLGQGVHHLLTTVNVGVE 163
Query: 112 DTKXMLKFGWNDQRH 68
D +L+ +D+ H
Sbjct: 164 DADDVLEIITDDEAH 178
>UniRef50_UPI0001555DA0 Cluster: PREDICTED: similar to olfactory
specific medium-chain acyl CoA synthetase; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to
olfactory specific medium-chain acyl CoA synthetase -
Ornithorhynchus anatinus
Length = 176
Score = 60.5 bits (140), Expect = 3e-08
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = +2
Query: 278 MSNPRQYKIPDWFLNRQKDIVDGKYSQL 361
M NPRQYKIPDWFLNRQKD+ DGKYSQ+
Sbjct: 1 MQNPRQYKIPDWFLNRQKDVKDGKYSQV 28
>UniRef50_Q9X1I5 Cluster: 30S ribosomal protein S13; n=14;
Bacteria|Rep: 30S ribosomal protein S13 - Thermotoga
maritima
Length = 125
Score = 55.2 bits (127), Expect = 1e-06
Identities = 44/121 (36%), Positives = 63/121 (52%)
Frame = +2
Query: 107 RIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 286
RI+ + +KV A T I G+GR S +LK ID +KR G+ T+EE+ KI
Sbjct: 3 RIVGVELPNNKKVWVALTYIYGIGRSRSFEILKNTGIDPEKRVGDLTDEEISKI------ 56
Query: 287 PRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 466
+Y I D F V+G+ L S++ ++ RL +I +RG+RH GL VRG
Sbjct: 57 -TKY-IQDHFK------VEGE--------LRSEVERNIRRLIEIGCYRGIRHKLGLPVRG 100
Query: 467 Q 469
Q
Sbjct: 101 Q 101
>UniRef50_Q7QRY8 Cluster: GLP_549_7513_8304; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_549_7513_8304 - Giardia lamblia ATCC
50803
Length = 263
Score = 47.6 bits (108), Expect = 2e-04
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Frame = -3
Query: 472 VLTTHTKAPVMSHPSVSANLLEPLQIFTEF*IQVGGG---QLAVFTINNILLPI*EPVWY 302
VL + + V++ +++A+ E LQ+ T + G G + VF I++ I P W
Sbjct: 29 VLPANLQVVVVADTALAASFTETLQVRT---VGRGYGIDQNVHVFARFKIIVTIKHPGWN 85
Query: 301 LILPRIRHDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPANTF--DSRXRKHNLAFAI 128
+ + D L C S V +NVGF E N+G N D K++LA +
Sbjct: 86 AVGEGVLKDLHESILLGRCELTSAFVNVNVGFLEGNIGKAAPNPLNSDKGTLKYDLALDV 145
Query: 127 DVRMHDTKXMLKFGWNDQRH 68
V+ H + + G ND+ H
Sbjct: 146 CVK-HTQEVPVVVGLNDRCH 164
>UniRef50_Q601J1 Cluster: 30S ribosomal protein S13; n=3; Mycoplasma
hyopneumoniae|Rep: 30S ribosomal protein S13 -
Mycoplasma hyopneumoniae (strain 232)
Length = 137
Score = 43.6 bits (98), Expect = 0.003
Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Frame = +2
Query: 107 RIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMS- 283
R+++ I ++++ A +I G+G+ + +++K + EE+ K I++
Sbjct: 3 RVLNVEIPNHKRIVIALCSIFGIGKSLATEIVEKT--------AKLQEEKFGKKFPILTE 54
Query: 284 NPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVR 463
N + +I + L +D+ + T +L +++ +++RL +I+ +RG+RH GL VR
Sbjct: 55 NTKVKEINEEVLQVIRDVAK---TYKTEGDLHREVQSNIKRLIEIKCYRGIRHRKGLPVR 111
Query: 464 GQ 469
GQ
Sbjct: 112 GQ 113
>UniRef50_A6PT06 Cluster: Ribosomal protein S13; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Ribosomal protein S13 -
Victivallis vadensis ATCC BAA-548
Length = 131
Score = 42.3 bits (95), Expect = 0.007
Identities = 35/121 (28%), Positives = 57/121 (47%)
Frame = +2
Query: 107 RIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 286
RI+ I G ++V F+ + GVG + +++K ID D +A + T +++ I I+
Sbjct: 3 RIIGVDIPGNKRVEFSLRYLYGVGPAKALEIIQKVGIDPDLKAKDLTPDQIGAITKIL-- 60
Query: 287 PRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 466
Q D+ L +L L D+ RL++I +RG+RH L VRG
Sbjct: 61 -------------QDDL-------LVEGDLRRTLAADIRRLQQINCYRGIRHRRSLPVRG 100
Query: 467 Q 469
Q
Sbjct: 101 Q 101
>UniRef50_A7PUB9 Cluster: Chromosome chr7 scaffold_31, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr7 scaffold_31, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 48
Score = 39.1 bits (87), Expect = 0.067
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 58 LXQNVAGHSIQISTXSSYHASAHRWQTQGYVCXDGYQRCWP 180
L +V G IST +S RW+T+ +VC D +QR WP
Sbjct: 5 LSMSVLGSERGISTHTSCAQHERRWETEDHVCSDLHQRYWP 45
>UniRef50_O66486 Cluster: 30S ribosomal protein S13; n=28; cellular
organisms|Rep: 30S ribosomal protein S13 - Aquifex
aeolicus
Length = 126
Score = 38.3 bits (85), Expect = 0.12
Identities = 32/121 (26%), Positives = 54/121 (44%)
Frame = +2
Query: 107 RIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 286
RI + +++ A T I G+G + + +K I KR GE T +E
Sbjct: 3 RIAGVDLPNNKRLEVALTYIYGIGWSRAREICEKTGIPCTKRVGELTPDE---------- 52
Query: 287 PRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 466
LN + +D Y +L +++ ++++LK + +RG+RH GL VRG
Sbjct: 53 ----------LNTLRKFIDENYK--VEGDLRREVQLNIKKLKDMGCYRGIRHARGLPVRG 100
Query: 467 Q 469
Q
Sbjct: 101 Q 101
>UniRef50_A0CSW0 Cluster: Chromosome undetermined scaffold_26, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_26,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 367
Score = 37.1 bits (82), Expect = 0.27
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +2
Query: 185 YSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDG 346
Y N + D + DK + E ++E E++IT++ + KI DW +KD+ DG
Sbjct: 93 YQNAIDSAQD-EKDKYSRETLQKEKEELITLICEMKHSKIEDWLKTIKKDLPDG 145
>UniRef50_Q6G2Y7 Cluster: 30S ribosomal protein S13; n=20; cellular
organisms|Rep: 30S ribosomal protein S13 - Bartonella
henselae (Rochalimaea henselae)
Length = 122
Score = 36.3 bits (80), Expect = 0.47
Identities = 30/121 (24%), Positives = 56/121 (46%)
Frame = +2
Query: 107 RIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 286
RI +I ++V+ A I G+G +++ + KK I + +R E ++ EV +I
Sbjct: 3 RIAGVNIPTNKRVIIALQYIHGIGPKFAQEITKKVGIPIGRRVHELSDAEVLQI------ 56
Query: 287 PRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 466
++ +D Y +L ++ +++RL + +RG+RH L VRG
Sbjct: 57 --------------REAIDQGYQ--VEGDLRREVAMNVKRLMDLGCYRGLRHRRSLPVRG 100
Query: 467 Q 469
Q
Sbjct: 101 Q 101
>UniRef50_Q7PY55 Cluster: ENSANGP00000013280; n=4;
Endopterygota|Rep: ENSANGP00000013280 - Anopheles
gambiae str. PEST
Length = 183
Score = 35.9 bits (79), Expect = 0.63
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +2
Query: 125 IDGKRKVMFAXTAIKGVGRRYSNIVLK---KADI-DLDKRAGECTEEEVEK 265
+D K KV A G+GR +S +LK K I DLD AGE T EE+EK
Sbjct: 1 MDLKNKVALVTGAATGLGRAFSEELLKHGAKVVICDLDSDAGELTVEELEK 51
>UniRef50_A6RYD3 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 82
Score = 35.9 bits (79), Expect = 0.63
Identities = 14/35 (40%), Positives = 26/35 (74%)
Frame = +2
Query: 368 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 472
+ L +L++++ER++ + ++RG RH GL VRGQ+
Sbjct: 5 TELKRRLQDNIERMRTMGSYRGRRHAMGLPVRGQN 39
>UniRef50_P46747 Cluster: Mitochondrial ribosomal protein S13; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S13 - Prototheca wickerhamii
Length = 119
Score = 35.5 bits (78), Expect = 0.83
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 362 TSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 469
T S++ R++++RL I ++RG RH GL VRGQ
Sbjct: 66 TGSDVRRFTRQNIQRLVNIHSYRGYRHIQGLPVRGQ 101
>UniRef50_Q5NQ42 Cluster: 30S ribosomal protein S13; n=107; cellular
organisms|Rep: 30S ribosomal protein S13 - Zymomonas
mobilis
Length = 122
Score = 35.1 bits (77), Expect = 1.1
Identities = 30/121 (24%), Positives = 56/121 (46%)
Frame = +2
Query: 107 RIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSN 286
RI +I ++V A T I G+G + ++ K I ++R + ++ EV +I
Sbjct: 3 RIAGVNIPTNKRVEIALTYIHGIGPTTAKKIVTKLGIAPERRVQDLSDNEVLQI------ 56
Query: 287 PRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRG 466
++ +D Y+ +L ++ +++RL + +RG+RH GL VRG
Sbjct: 57 --------------REAIDADYT--VEGDLRRQVAMNIKRLMDLACYRGLRHRKGLPVRG 100
Query: 467 Q 469
Q
Sbjct: 101 Q 101
>UniRef50_Q4WP11 Cluster: 40S ribosomal protein S13; n=5;
Eurotiomycetidae|Rep: 40S ribosomal protein S13 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 169
Score = 34.7 bits (76), Expect = 1.4
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +2
Query: 368 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 469
++L ++ +D++RLK+ ++RG RH GL VRGQ
Sbjct: 103 NDLRRQILDDIKRLKESGSYRGRRHALGLPVRGQ 136
>UniRef50_A1CXK9 Cluster: 40S ribosomal protein S13; n=7;
Pezizomycotina|Rep: 40S ribosomal protein S13 -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 118
Score = 34.7 bits (76), Expect = 1.4
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +2
Query: 368 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 469
++L ++ +D++RLK+ ++RG RH GL VRGQ
Sbjct: 66 NDLRRQILDDIKRLKESGSYRGRRHALGLPVRGQ 99
>UniRef50_Q0QIP8 Cluster: Ribosomal protein S13; n=1;
Oltmannsiellopsis viridis|Rep: Ribosomal protein S13 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 117
Score = 34.3 bits (75), Expect = 1.9
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +2
Query: 383 KLREDLERLKKIRAHRGMRHYWGLRVRGQ 469
K RE+++RL +I ++RG RH GL RGQ
Sbjct: 72 KKRENIQRLVRISSYRGFRHTAGLPCRGQ 100
>UniRef50_Q5B4R2 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 130
Score = 34.3 bits (75), Expect = 1.9
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +2
Query: 368 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 469
++L ++ +D++RLK+ +RG RH GL VRGQ
Sbjct: 65 NDLRRQVLDDIKRLKETGTYRGRRHALGLPVRGQ 98
>UniRef50_O59772 Cluster: Mitochondrial ribosomal protein subunit
S37; n=1; Schizosaccharomyces pombe|Rep: Mitochondrial
ribosomal protein subunit S37 - Schizosaccharomyces
pombe (Fission yeast)
Length = 151
Score = 33.9 bits (74), Expect = 2.5
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 395 DLERLKKIRAHRGMRHYWGLRVRGQH 472
D+ RL IR +RGMRH GL V GQ+
Sbjct: 76 DISRLVNIRCYRGMRHVNGLPVNGQN 101
>UniRef50_Q98JF7 Cluster: Mll1963 protein; n=1; Mesorhizobium
loti|Rep: Mll1963 protein - Rhizobium loti
(Mesorhizobium loti)
Length = 315
Score = 33.5 bits (73), Expect = 3.3
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 244 AFASTLVKINVGFFENNVG-VPPANTFDSRXRK-HNLAFAIDVRMHDTKXML 95
AFA T V+ VGF++ VG + +D +K H+ AF DV + DTK L
Sbjct: 23 AFAETPVEPTVGFYKYTVGDIEVTAIYDGIWKKPHDPAFIKDVSVEDTKAAL 74
>UniRef50_A6LHC7 Cluster: Putative outer membrane protein, probably
involved in nutrient binding; n=1; Parabacteroides
distasonis ATCC 8503|Rep: Putative outer membrane
protein, probably involved in nutrient binding -
Parabacteroides distasonis (strain ATCC 8503 / DSM 20701
/ NCTC11152)
Length = 531
Score = 33.5 bits (73), Expect = 3.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 182 RYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDW 313
RYS ++ KA+ + K G+ T+E V+ I ++ R +K DW
Sbjct: 410 RYSEVIYNKAEALMRKNGGKATQEVVDMINSV--RQRSFKAEDW 451
>UniRef50_Q9TCB7 Cluster: Ribosomal protein S13; n=1; Nephroselmis
olivacea|Rep: Ribosomal protein S13 - Nephroselmis
olivacea
Length = 125
Score = 33.5 bits (73), Expect = 3.3
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 353 SQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 469
S +T S L +++D+ RL I +RG R+ L VRGQ
Sbjct: 63 SYVTGSKLKRTIQQDMSRLISISCYRGFRYIQKLPVRGQ 101
>UniRef50_O21258 Cluster: Ribosomal protein S13; n=1; Reclinomonas
americana|Rep: Ribosomal protein S13 - Reclinomonas
americana
Length = 122
Score = 33.1 bits (72), Expect = 4.4
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 359 LTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 469
L S L +++RL I+++RG+RH +GL V GQ
Sbjct: 65 LIESELRKNQTYNIKRLLDIKSYRGLRHAYGLPVHGQ 101
>UniRef50_Q6CFI9 Cluster: Yarrowia lipolytica chromosome B of strain
CLIB122 of Yarrowia lipolytica; n=2;
Saccharomycetales|Rep: Yarrowia lipolytica chromosome B
of strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 156
Score = 33.1 bits (72), Expect = 4.4
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 368 SNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 469
S+L K+ D+ER +K ++ G RH G+ V+GQ
Sbjct: 70 SDLAKKINADIERKRKTGSYVGRRHVMGMPVKGQ 103
>UniRef50_UPI0000DA3F53 Cluster: PREDICTED: similar to
peptidylprolyl isomerase D; n=1; Rattus norvegicus|Rep:
PREDICTED: similar to peptidylprolyl isomerase D -
Rattus norvegicus
Length = 223
Score = 32.7 bits (71), Expect = 5.8
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +2
Query: 119 PHIDGKRKVMFAXTAIKGVG--RRYSNIVLKKADIDLDKRAGECTEEEVEKIITI 277
PH+DGKR V+F IKG+G R N+ + + L A EC + +V+KI+ I
Sbjct: 150 PHVDGKR-VLFG-QVIKGLGVARMLENVEVNGEPVKLCVIA-ECGDVDVDKIVLI 201
>UniRef50_Q2AKW7 Cluster: Ribosomal protein S13; n=1; Bacillus
weihenstephanensis KBAB4|Rep: Ribosomal protein S13 -
Bacillus weihenstephanensis KBAB4
Length = 75
Score = 32.7 bits (71), Expect = 5.8
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Frame = +2
Query: 257 VEKIITIMSNPRQYKIPDWF---LNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 427
++K++ + PR+++ D L R +DI+D +L ++ +++RL +I ++
Sbjct: 6 LKKLLQKLVFPRKHESRDLSEDELGRIRDIID---RIKVEGDLRREVSLNIKRLMEIGSY 62
Query: 428 RGMRHYWGLRVRG 466
RG+RH GL VRG
Sbjct: 63 RGLRHRRGLPVRG 75
>UniRef50_Q026Q4 Cluster: Trigger factor; n=1; Solibacter usitatus
Ellin6076|Rep: Trigger factor - Solibacter usitatus
(strain Ellin6076)
Length = 422
Score = 32.7 bits (71), Expect = 5.8
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +2
Query: 227 KRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQ-KDIVDGKYSQLTSSNLD-SKLREDL 400
+R E +E KI+ + + ++ +P+ F+ RQ ++ V+ + +D SKL+ D
Sbjct: 272 QRQYEAQQEAKNKIVDKLVDAHEFPVPEVFVERQIRNRVEQSLRAMAEQGVDPSKLKLDW 331
Query: 401 ERLKKIRAHRGMR 439
E++K+ + + R
Sbjct: 332 EKVKEAQREKATR 344
>UniRef50_A6Q707 Cluster: Periplasmic nitrate reductase component
NapD; n=1; Sulfurovum sp. NBC37-1|Rep: Periplasmic
nitrate reductase component NapD - Sulfurovum sp.
(strain NBC37-1)
Length = 119
Score = 32.7 bits (71), Expect = 5.8
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 236 GECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSN-LDSKLREDLERLK 412
G+ EEE+EK++ I P D + Q+D +D + +L N + L +D ++
Sbjct: 46 GKGVEEEIEKLVKIQRLPNVI-AADMMMTYQEDELDAEVKRLEEENPVPDVLNDDDIDVR 104
Query: 413 KIRAHRGMRH 442
+ H +RH
Sbjct: 105 DVEYHGDLRH 114
>UniRef50_A6LXE0 Cluster: Putative uncharacterized protein
precursor; n=1; Clostridium beijerinckii NCIMB 8052|Rep:
Putative uncharacterized protein precursor - Clostridium
beijerinckii NCIMB 8052
Length = 445
Score = 32.7 bits (71), Expect = 5.8
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = +2
Query: 173 VGRRYSNIVLKKADIDLDKRAGECTEEEVE----KIITIMSNPRQYKIPDWFLNRQKDIV 340
V +RY+ I+LKK DID K E +++ K+ ++ P Q + LN+ +D +
Sbjct: 148 VTKRYNAIILKKIDIDKLKTGLEIKNNDLDALKIKVSVGLAIPNQLEDKQIELNKAQDEI 207
Query: 341 DGKYSQLTSSNLD 379
K + L +NLD
Sbjct: 208 KAKENSL-KNNLD 219
>UniRef50_Q8W9S0 Cluster: Ribosomal protein S13; n=1; Mesostigma
viride|Rep: Ribosomal protein S13 - Mesostigma viride
Length = 116
Score = 32.7 bits (71), Expect = 5.8
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 374 LDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 469
L +++ + ERL KI ++RG RH+ GL RGQ
Sbjct: 72 LINRIHLNKERLIKISSYRGFRHHRGLPARGQ 103
>UniRef50_O16005 Cluster: Rhodopsin; n=84; Fungi/Metazoa group|Rep:
Rhodopsin - Sepia officinalis (Common cuttlefish)
Length = 464
Score = 32.7 bits (71), Expect = 5.8
Identities = 22/104 (21%), Positives = 45/104 (43%)
Frame = -1
Query: 333 SFCLFRNQSGILYCLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVX 154
S +F GI+ C G +++ +F+ + S+ +PA + AF + PL+ +
Sbjct: 36 SLGIFIGICGIIGCTGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTIS 95
Query: 153 ANITLRLPSMCGCMIRRXC*NLDGMTSDILVKLXTNVPKHNXRG 22
I + M C + + G+ S I+ ++ ++N G
Sbjct: 96 CFIKKWVFGMAACKVYGFIGGIFGLMS-IMTMSMISIDRYNVIG 138
>UniRef50_A1L3M1 Cluster: LOC100037042 protein; n=1; Xenopus
laevis|Rep: LOC100037042 protein - Xenopus laevis
(African clawed frog)
Length = 384
Score = 32.3 bits (70), Expect = 7.7
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 269 ITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLK 412
+ I ++ KIPD LN + V +S+ + N +S+L+ D +R+K
Sbjct: 6 VGIHKEEQEQKIPDPLLNGDAEDVPQHFSETPTCNTESRLQADQQRIK 53
>UniRef50_A6CG73 Cluster: Putative uncharacterized protein; n=1;
Planctomyces maris DSM 8797|Rep: Putative
uncharacterized protein - Planctomyces maris DSM 8797
Length = 562
Score = 32.3 bits (70), Expect = 7.7
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Frame = +2
Query: 119 PHIDGKRKVMFAXTAIKGVGRRYSN-IVLKKADIDLDKRAGECTEEEVEKIITIMSNPR- 292
P+ GK K++ GR + N ++L+ D + E EE++ + I+ PR
Sbjct: 31 PNNSGKSKILKEIRRFCSEGRSHPNDLILEHLTFDQNNTPDEIPEEQIHLLKNIIQQPRD 90
Query: 293 -QYKIPDWFL----NRQKDIVDGK-YSQLTSSNLDS 382
++ IP + +++K + + K +S + N+DS
Sbjct: 91 HEHTIPGYIYVGDKSKRKHVDERKLFSAFSKPNIDS 126
>UniRef50_A0DZU7 Cluster: Chromosome undetermined scaffold_70, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_70,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 713
Score = 32.3 bits (70), Expect = 7.7
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 185 YSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQK 331
Y + +K ++D K C ++E+EK + SNP + W + +K
Sbjct: 533 YMKVQGQKNELDFHKLINSCLDKEIEKNLKNFSNPATIDLYPWMIKYRK 581
>UniRef50_Q6A6Q8 Cluster: 30S ribosomal protein S13; n=32; cellular
organisms|Rep: 30S ribosomal protein S13 -
Propionibacterium acnes
Length = 123
Score = 32.3 bits (70), Expect = 7.7
Identities = 22/78 (28%), Positives = 36/78 (46%)
Frame = +2
Query: 236 GECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKK 415
G E K I + R +++ D L +D ++ Y +L ++ D+ R +
Sbjct: 26 GRTRATETLKATGISGDLRVHELTDDQLVALRDHIEANYH--VEGDLRREVAADIRRKIE 83
Query: 416 IRAHRGMRHYWGLRVRGQ 469
I ++G RH GL VRGQ
Sbjct: 84 IGTYQGRRHRSGLPVRGQ 101
>UniRef50_P42732 Cluster: 30S ribosomal protein S13, chloroplast
precursor; n=6; cellular organisms|Rep: 30S ribosomal
protein S13, chloroplast precursor - Arabidopsis
thaliana (Mouse-ear cress)
Length = 169
Score = 32.3 bits (70), Expect = 7.7
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2
Query: 398 LERLKKIRAHRGMRHYWGLRVRGQ 469
++RLK+I+ +RG+RH GL RGQ
Sbjct: 122 IKRLKEIQCYRGVRHIQGLPCRGQ 145
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 515,630,785
Number of Sequences: 1657284
Number of extensions: 9926000
Number of successful extensions: 28355
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 27671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28340
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36238783989
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -