Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_B14
(552 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein... 206 2e-54
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos... 206 2e-54
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi... 34 0.016
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 27 1.8
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 27 2.4
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 26 3.2
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 26 4.2
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 25 5.6
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 25 5.6
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 7.4
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 7.4
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 9.8
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 9.8
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 9.8
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 9.8
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 9.8
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 25 9.8
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 9.8
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 9.8
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 9.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 9.8
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 9.8
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 9.8
>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 152
Score = 206 bits (503), Expect = 2e-54
Identities = 95/135 (70%), Positives = 113/135 (83%)
Frame = +2
Query: 68 MSLVIPSKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECT 247
MSLV+P FQH LR+++ ++DGK KVMFA T IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 248 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 427
EE+E+I+TI+ NP Q+KIP WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ H
Sbjct: 61 TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120
Query: 428 RGMRHYWGLRVRGQH 472
RG+RH LRVRGQH
Sbjct: 121 RGLRHALDLRVRGQH 135
>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 152
Score = 206 bits (503), Expect = 2e-54
Identities = 95/135 (70%), Positives = 113/135 (83%)
Frame = +2
Query: 68 MSLVIPSKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECT 247
MSLV+P FQH LR+++ ++DGK KVMFA T IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 248 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 427
EE+E+I+TI+ NP Q+KIP WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ H
Sbjct: 61 TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120
Query: 428 RGMRHYWGLRVRGQH 472
RG+RH LRVRGQH
Sbjct: 121 RGLRHALDLRVRGQH 135
>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 151
Score = 33.9 bits (74), Expect = 0.016
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 395 DLERLKKIRAHRGMRHYWGLRVRGQH 472
D+ RL IR +RGMRH GL V GQ+
Sbjct: 76 DISRLVNIRCYRGMRHVNGLPVNGQN 101
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 55 QLXQNVAGHSIQISTXSSYHASAHRWQT 138
++ +N+ HS+QI S SAHR QT
Sbjct: 215 KMIENLHKHSVQIDDLSKILVSAHRAQT 242
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 119 PHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLD---KRAGECTEEEVE 262
PH+DGK V K R N+ K D + + G CT++++E
Sbjct: 123 PHLDGKHVVFGKVIQGKSTVRTIENLETKNDDPVVPVVIEECGTCTKDQIE 173
>SPAC227.07c |pab1||protein phosphatase regulatory subunit
Pab1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -3
Query: 280 HDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPANT 170
+++D F+ F C F+ + G + NN G+ P ++
Sbjct: 336 YENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDS 372
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 398 NLHGVLNPSWRRSAGCIYHQQYPFAYLGTSLVSY 297
N H ++PS R S+ +Y P Y ++ VSY
Sbjct: 495 NNHCAVSPSRRSSSNALYLATLPMGYERSNSVSY 528
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 131 GKRKVMFAXTAIKGVGRRYSNIVLKKADIDL 223
GK+KV+ I + R+YSN+ +KA+ L
Sbjct: 10 GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 25.4 bits (53), Expect = 5.6
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +2
Query: 221 LDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDL 400
L+ A TEE II+ N QY IP+ F+ +K+ + + +S +SK D
Sbjct: 105 LESNATAFTEELWSLIISASQN--QYGIPEKFILEKKEEISKLKDRTEASKEESKTVTDH 162
Query: 401 ERLKKIR 421
++ R
Sbjct: 163 SNRRESR 169
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 7.4
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +2
Query: 200 LKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLD 379
L+K D L+ R+ ++ +E+ + ++ IP+ ++ +D + +L ++ D
Sbjct: 974 LRKLDGVLEARSKRLSQ--LEERVKLLGAGSTSSIPNSPRASKRVSLDSEDKKLVPASPD 1031
Query: 380 -SKLREDLERLKKIRAHRGMRHYWGLRVR 463
S ++ + LK R GM H W LR+R
Sbjct: 1032 KSAVQRGITALK--RDAEGMSHIWQLRLR 1058
>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 127
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -1
Query: 297 YCLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLEYLR 178
YC F + + + V+SP ++ M+ F+R +L YL+
Sbjct: 58 YCANFIALFRVIFGTIFVYSPDGITPFMTDFVRWILIYLK 97
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +2
Query: 47 LVXNXTKMSLVIPSKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIV 199
L+ N T+++ I K+ +++HP I+ ++ KG+ ++ V
Sbjct: 904 LLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYV 954
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +2
Query: 47 LVXNXTKMSLVIPSKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIV 199
L+ N T+++ I K+ +++HP I+ ++ KG+ ++ V
Sbjct: 904 LLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYV 954
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +2
Query: 47 LVXNXTKMSLVIPSKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIV 199
L+ N T+++ I K+ +++HP I+ ++ KG+ ++ V
Sbjct: 904 LLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYV 954
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +2
Query: 47 LVXNXTKMSLVIPSKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIV 199
L+ N T+++ I K+ +++HP I+ ++ KG+ ++ V
Sbjct: 904 LLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYV 954
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +2
Query: 47 LVXNXTKMSLVIPSKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIV 199
L+ N T+++ I K+ +++HP I+ ++ KG+ ++ V
Sbjct: 904 LLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYV 954
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +1
Query: 364 LLQLGFKTP*RFGEAQEDSRSQRDATLLGPSCAWSAH*DYWQERKNCW 507
L L FK+ + D +R AT + S W A+ YWQ W
Sbjct: 43 LRHLPFKSSINEETREWDLSGRRGATTMYSSMNWLANSTYWQTTLVGW 90
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +2
Query: 47 LVXNXTKMSLVIPSKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIV 199
L+ N T+++ I K+ +++HP I+ ++ KG+ ++ V
Sbjct: 904 LLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYV 954
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +2
Query: 47 LVXNXTKMSLVIPSKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIV 199
L+ N T+++ I K+ +++HP I+ ++ KG+ ++ V
Sbjct: 904 LLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYV 954
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +2
Query: 47 LVXNXTKMSLVIPSKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIV 199
L+ N T+++ I K+ +++HP I+ ++ KG+ ++ V
Sbjct: 904 LLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYV 954
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +2
Query: 47 LVXNXTKMSLVIPSKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIV 199
L+ N T+++ I K+ +++HP I+ ++ KG+ ++ V
Sbjct: 904 LLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYV 954
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +2
Query: 47 LVXNXTKMSLVIPSKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIV 199
L+ N T+++ I K+ +++HP I+ ++ KG+ ++ V
Sbjct: 904 LLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYV 954
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +2
Query: 47 LVXNXTKMSLVIPSKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIV 199
L+ N T+++ I K+ +++HP I+ ++ KG+ ++ V
Sbjct: 904 LLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYV 954
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,492
Number of Sequences: 5004
Number of extensions: 41985
Number of successful extensions: 129
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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