Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_B14
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 206 1e-53
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 194 3e-50
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 193 9e-50
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 88 4e-18
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 38 0.007
03_01_0404 + 3138624-3140096 31 0.61
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 29 2.5
01_07_0179 - 41814886-41815074,41815172-41815222,41815365-418154... 29 2.5
04_04_0883 + 29079315-29079715,29080918-29081038,29081127-290812... 27 10.0
03_06_0455 - 34054428-34054619,34054729-34054867,34054945-34055084 27 10.0
03_01_0595 + 4391877-4392005,4392155-4392287,4392402-4392490,439... 27 10.0
02_05_1211 + 34956601-34956850,34956950-34957102,34957562-349576... 27 10.0
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 206 bits (502), Expect = 1e-53
Identities = 86/127 (67%), Positives = 114/127 (89%)
Frame = +2
Query: 92 FQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKII 271
FQH LR+++ ++DGK+K+MFA T+IKG+GRR+SNI KKADID++KRAGE T EE+E+++
Sbjct: 5 FQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELERLM 64
Query: 272 TIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWG 451
T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWG
Sbjct: 65 TVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWG 124
Query: 452 LRVRGQH 472
LRVRGQH
Sbjct: 125 LRVRGQH 131
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 194 bits (474), Expect = 3e-50
Identities = 90/151 (59%), Positives = 118/151 (78%), Gaps = 16/151 (10%)
Frame = +2
Query: 68 MSLVIPSKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKR----- 232
MSL+ FQH LR+++ ++DGK+K+MFA T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVC 60
Query: 233 -----------AGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLD 379
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD
Sbjct: 61 YYLAVHNYVEWAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALD 120
Query: 380 SKLREDLERLKKIRAHRGMRHYWGLRVRGQH 472
KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 121 MKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 151
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 193 bits (470), Expect = 9e-50
Identities = 90/153 (58%), Positives = 118/153 (77%), Gaps = 18/153 (11%)
Frame = +2
Query: 68 MSLVIPSKFQHXLRIMHPHIDGKRKVMFAXTAIKGVGRRYSNIVLKKADIDLDKR----- 232
MSL+ FQH LR+++ ++DGK+K+MFA T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60
Query: 233 -------------AGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSN 373
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+
Sbjct: 61 PPSRRQISVMVGGAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNA 120
Query: 374 LDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 472
LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 121 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 153
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 88.2 bits (209), Expect = 4e-18
Identities = 39/55 (70%), Positives = 46/55 (83%), Gaps = 1/55 (1%)
Frame = +2
Query: 311 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 472
W L R+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 61
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +2
Query: 389 REDLERLKKIRAHRGMRHYWGLRVRGQ 469
R +ERLK+IR +RG+RH GL VRGQ
Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPVRGQ 134
>03_01_0404 + 3138624-3140096
Length = 490
Score = 31.1 bits (67), Expect = 0.61
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 341 DGKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 439
+G Y QL++ LDS ++D R++K+ RG+R
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 402 RGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELLVY 512
RG + L C+++ F+C +STL + ELL++
Sbjct: 184 RGQIEYELYPLCNLSFFFICYLSTLLIFCNANELLLF 220
>01_07_0179 -
41814886-41815074,41815172-41815222,41815365-41815469,
41815852-41815945,41816056-41816150,41816581-41816700,
41816737-41816832,41817272-41817569,41817777-41817853,
41818932-41819447
Length = 546
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 399 WRGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELL 506
W+ FA+ G D+ F+ + T LLA EE LL
Sbjct: 212 WQEESCFAIGAGTDVANLFISIKRTQLLLATEEWLL 247
>04_04_0883 +
29079315-29079715,29080918-29081038,29081127-29081246,
29081646-29081876,29081951-29082517
Length = 479
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 242 CTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGK-YSQLTSSNL 376
C EE ++ M P + + DW +N D+V+ + Y+++ + N+
Sbjct: 236 CNTEEDCALLASMLPPVEAALLDWAINLMADVVEHENYNKMNARNI 281
>03_06_0455 - 34054428-34054619,34054729-34054867,34054945-34055084
Length = 156
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 321 FRNQSGILYCLGFDMIVIIFSTSSSVHSPARLS 223
F N YCLG +I ++++T+ RLS
Sbjct: 40 FDNYPEYTYCLGISIIAVLYTTAQVTRDVHRLS 72
>03_01_0595 +
4391877-4392005,4392155-4392287,4392402-4392490,
4392639-4392696,4393182-4393337,4393556-4393704,
4394208-4394327,4394513-4394726,4394813-4394915,
4395022-4395069,4395267-4395312,4395647-4395834,
4395943-4396105,4396227-4396292
Length = 553
Score = 27.1 bits (57), Expect = 10.0
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = +3
Query: 411 RRFALTEGCDITG---AFVCVVSTLRLLAGEE--ELLVYQRRSKL 530
+ FALT+G ITG F V L+LL +E E+ +++ KL
Sbjct: 329 KHFALTDGTQITGDAYVFATPVDILKLLVPQEWKEISYFKKLEKL 373
>02_05_1211 +
34956601-34956850,34956950-34957102,34957562-34957674,
34958092-34958198,34958289-34958404,34958502-34958577,
34958652-34958693,34958809-34958917,34959102-34959199,
34959297-34959390,34959517-34959642
Length = 427
Score = 27.1 bits (57), Expect = 10.0
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +2
Query: 209 ADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDS-- 382
+ +DLD R+G T V K T+ NP + ++ + + KD Y +LT+ N ++
Sbjct: 190 SSVDLDIRSGSNTRHVVLKRQTVTLNPVRSRMCE--IPGAKDNSKVGYIKLTTFNQNAAG 247
Query: 383 KLREDLERLKK 415
++E L++L++
Sbjct: 248 SVKEALQKLRE 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,029,700
Number of Sequences: 37544
Number of extensions: 278818
Number of successful extensions: 754
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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