Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B13
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0567 - 23914330-23914461,23915016-23915136,23915954-239160...    30   1.8  
02_03_0151 - 15759254-15760459                                         29   3.2  
07_03_0244 - 15715047-15715163,15716672-15716824,15718629-157187...    29   4.2  
06_02_0024 - 10714741-10716241,10716774-10717840                       28   7.4  
12_01_0422 - 3325205-3325317,3325495-3325591,3325945-3326090,332...    27   9.8  
01_06_1357 + 36632992-36633621,36634003-36635136,36635525-366361...    27   9.8  

>02_04_0567 -
           23914330-23914461,23915016-23915136,23915954-23916048,
           23916131-23916301,23917291-23917380,23917636-23918139
          Length = 370

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 413 FNLPIYLRS-QCLRTFRLSPNSPAGTPQSPTPLP 315
           FNLP +LRS +C  TF   P  P   P  P P P
Sbjct: 20  FNLPPWLRSLRCPFTFLCPPPPPPPPPPPPPPPP 53


>02_03_0151 - 15759254-15760459
          Length = 401

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 194 GRLTLTPIRTTREQKEVLTSAEVL*HVQRRRHVPVL*QEAGAAVLAIG 337
           G LT +P   +RE +     A    H +RRRH+P L      A   +G
Sbjct: 26  GELTASPALVSREWRRAAREAHQR-HRRRRRHLPCLVAHVHGAAAGVG 72


>07_03_0244 -
           15715047-15715163,15716672-15716824,15718629-15718748,
           15718830-15719045,15719902-15719968,15720051-15720125,
           15720607-15720698,15721053-15721154,15721642-15721711,
           15721788-15721846,15721947-15722031,15722443-15722520,
           15722627-15722725,15722819-15722910,15725572-15725661,
           15725937-15725995,15727966-15728281,15728627-15728702,
           15729998-15730308,15730577-15730634,15731082-15731092,
           15731247-15731397,15733372-15733778
          Length = 967

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 404 PIYLRSQCLRTFRLSPNSPAGTPQSPTPLPR 312
           P +LR   LR  R +  SPA  P  P+P PR
Sbjct: 10  PTFLREVELRLLRCTLPSPATLPPPPSPPPR 40


>06_02_0024 - 10714741-10716241,10716774-10717840
          Length = 855

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 7   ADEFLPRLCGVSTSKMRSLTFVLLAAILGTALAVGQYYVPRSYYTIDSDGHES 165
           A++   +L   +  K RSL  +LLA +  T         P  Y+ +D DGH++
Sbjct: 352 ANDDREKLLNQALEKARSLV-LLLATLAATITYQAVLDPPGGYWQVDKDGHKA 403


>12_01_0422 -
           3325205-3325317,3325495-3325591,3325945-3326090,
           3326188-3326227,3326543-3326595,3326687-3326760,
           3326868-3326950,3327096-3327164,3327281-3327628
          Length = 340

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 86  SLEPLSQWDNITCRVPTTRSTPMGMSHNRYLCGD*GGRLTLT--PIRTTREQKEVLTSAE 259
           S E  S  + +   +   R++P    HN       G   T +  P+RT REQK+ L   E
Sbjct: 226 SSERSSNNNGVESMIEKRRTSPAPTYHNNKQNNSIGYSTTSSSAPVRTVREQKDNLMDLE 285

Query: 260 VL*HVQRR 283
            L   ++R
Sbjct: 286 KLDSARKR 293


>01_06_1357 +
           36632992-36633621,36634003-36635136,36635525-36636193,
           36636250-36636343,36636378-36636490
          Length = 879

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = -1

Query: 461 FLIEGSM*PAVTMFLLFNLPIYLRSQCLRTFRLSPNSPAGTPQSPTPLPR 312
           FLI  S+ P  T+      P   R    R  R SPN  A  P+SP P PR
Sbjct: 295 FLILPSLFPKPTILAARIHPSIFRG---RHIRCSPNG-AAVPESPEPAPR 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,296,552
Number of Sequences: 37544
Number of extensions: 372223
Number of successful extensions: 1023
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)