Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B13
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    23   3.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   5.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.8  

>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
 Frame = +2

Query: 431 RLATYFL--LLKMSIFVYKLFSISCKLTPSIIDVHRCFATAGR 553
           R   +FL  +L  S FV    SI C     +I  H C    G+
Sbjct: 6   RCTFFFLSVILITSYFVTPTMSIKCNCKRHVIKPHICRKICGK 48


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -3

Query: 384 VPENIQIISEFSGGHTPIANTAAPASCYSTGTCLRLCTC*STSADVSTSFCSLV 223
           VP N++ I      H P ++T+ PA+  +T T     T  + +A  +T+   L+
Sbjct: 82  VPGNLEQIGS-RPLHPPASSTSLPATITTTTTTTTTTTA-TAAATATTTATGLI 133


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 202 NPYPYSYNQGAEGSADVSGGAL 267
           NPYP +   G +G     GG L
Sbjct: 361 NPYPLNTTNGRKGLLKGGGGYL 382


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 449 LLLKMSIFVYKLFSISCKLTPSIIDVH 529
           LL K  IF   L SIS  +T  +++VH
Sbjct: 306 LLGKYLIFAMILVSISICVTVVVLNVH 332


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 449 LLLKMSIFVYKLFSISCKLTPSIIDVH 529
           LL K  IF   L SIS  +T  +++VH
Sbjct: 306 LLGKYLIFAMILVSISICVTVVVLNVH 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,001
Number of Sequences: 438
Number of extensions: 4203
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)