Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B11
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    29   0.58 
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    28   1.8  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    26   7.2  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   7.2  
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    26   7.2  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    25   9.5  

>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 791 KXTSLLHLSQ*RSPWSPSDL*SSRKGFDSNSGLNIFRKYTQHFIT 657
           K   + H SQ R P+S SD+  ++    S    NI+ +Y Q+ ++
Sbjct: 373 KRAFVSHFSQNRKPYSQSDISKAQSSSFSEEPSNIYDEYEQNLLS 417


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 586 LDILEDHPNCYIRDKNDIVLT-DSTVMKCWVYFLKMFKPELLSKPFLEDYKSEGDHGLRY 762
           L + ++    +IR   D+V + D      W  ++  F    L  P+L+ Y+SE  H + Y
Sbjct: 200 LPVSDEEQLDWIRANEDLVHSQDIDEALEWAEYVLRFTQSHL--PYLQTYESENLHEINY 257

Query: 763 CERCKRDVXFKLK 801
            E    +  +K++
Sbjct: 258 LESMCENALYKIR 270


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 571 KMLSNLDILEDHPNCYIRDKNDIVLTDSTVMKCWVYFLKMFKPELLS 711
           K LS L +L    +  ++  ND++  +   M   + F K  +P LLS
Sbjct: 208 KSLSVLPVLHSLDDPLVKKMNDVIRKEDGTMGSLILFTKSGQPRLLS 254


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -3

Query: 283 SKKHDPQLINSIVLIGIQF 227
           S +HDP+L++S+V + IQ+
Sbjct: 157 STQHDPELLSSLVTMHIQY 175


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = +1

Query: 514 LHSPGTGYNVKGEIYEVDDKMLSNLDILEDHPNCYIRDKNDIVLTDSTVMKCWVYFLKMF 693
           LH    G  ++  ++ +  K+L  +  L  + NCY+  KN      ++++  ++  LK+F
Sbjct: 489 LHEVAVGTPLQQFVHNLSQKLLFLVFQLSTNTNCYLDSKN-----ATSLLALYINALKVF 543

Query: 694 KPELLSK 714
            P L+ K
Sbjct: 544 -PCLMGK 549


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 686 KCLNRNYYRSLFWRTTSLKATTGCAIAKGV 775
           K LN + Y+S  WR  S+ A TG  I   +
Sbjct: 140 KILNISKYKSSHWRIFSVSALTGLNIKDAI 169


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 181 QKLIRSGVNYHMPSIRTVSQS 243
           Q  ++  +NYH+P I T SQS
Sbjct: 658 QVAVQEWMNYHIPGICTTSQS 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,756
Number of Sequences: 5004
Number of extensions: 71705
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)