Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B11
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    26   0.47 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    26   0.47 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.4  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   7.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   7.7  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +1

Query: 421 PENGVATFIAEGMTKEKYPLIIATKYNVPFLLHSPGTGYNVKGEIYEVDDKMLSNLDILE 600
           PE+ + TF+          L   + Y     LH       +  E +E D K+  NL++L 
Sbjct: 304 PESDLVTFLCYPSVMNLDDLTRRSLYLSDIPLHDATRDLVLMSEQFEADYKLTRNLELLT 363

Query: 601 D 603
           D
Sbjct: 364 D 364


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +1

Query: 421 PENGVATFIAEGMTKEKYPLIIATKYNVPFLLHSPGTGYNVKGEIYEVDDKMLSNLDILE 600
           PE+ + TF+          L   + Y     LH       +  E +E D K+  NL++L 
Sbjct: 304 PESDLVTFLCYPSVMNLDDLTRRSLYLSDIPLHDATRDLVLMSEQFEADYKLTRNLELLT 363

Query: 601 D 603
           D
Sbjct: 364 D 364


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 499 NVPFLLHSPGTGYNVKGEIYEVDDKMLSNLDI 594
           NV  +L    T YN+   + ++D   L++LDI
Sbjct: 505 NVTNILSMDNTQYNLDLSLPQLDSTELADLDI 536


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/55 (20%), Positives = 27/55 (49%)
 Frame = +3

Query: 330 NTLQQKCNGAQSIRLWYFKKK*TESRHHDEPRERGSDFYS*RNDKRKVSVDHSNK 494
           N+L+ + +G Q     Y +++      + E RE+   +    N+K K+  + +++
Sbjct: 215 NSLRNRTHGFQHTSSRYSRERSCSRDRNREYREKDRRYEKLHNEKEKLLEERTSR 269


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +1

Query: 343 KNAMAHKVFVYGTLKRNEPNHGTMTNPENGVATFIAEGMT 462
           KNA+ ++V+    +  N    G +   ++ ++ FI  G+T
Sbjct: 26  KNAIFYQVYPRSFMDSNSDGIGDLKGIKDKLSHFIESGIT 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,272
Number of Sequences: 438
Number of extensions: 4681
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)