Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B10
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    30   0.43 
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    29   0.57 
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   7.0  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    25   9.3  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    25   9.3  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.3  

>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 778 ITSHVLYNTAPVQFREIIFPIRKKYIALSRTYYKQGTHSISLAH 647
           I +H+  NT+ ++  + +FP RK Y A    YYK  T    LAH
Sbjct: 236 IQTHISENTSEIELVKELFPERKSY-ADVYDYYKLLTPQTILAH 278


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 768 TSXTIQHRFSSVKSSFLSEKNT--LRSLVRTTSKAHIQSVSHTS 643
           T   ++   S  K+SFLS KN+  ++S     S AH Q V+HT+
Sbjct: 32  TPAPVRKGLSKFKNSFLSRKNSSQIKSPSDYKSSAHEQRVNHTT 75


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 297 IKESIYKNSYTIDNGKTNATKENSNIV 217
           + + + K+S TI+N  +N +K+N N+V
Sbjct: 682 VVDFLLKHSKTIENVSSNFSKKNRNVV 708


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 45  SLRFCRXLQASFSSXQXXVVSFXLAS 122
           SLRFC  LQ SF         + LAS
Sbjct: 234 SLRFCSRLQCSFHKYDEKTKQYSLAS 259


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 771 VTSXTIQHRFSSVKSSFLSEKNTLRSLVRTTSKAHIQSVSHTS 643
           V++ T + R +SV  SF++        V  + +AH++S S  S
Sbjct: 276 VSASTSRERSTSVAPSFITSDQAATPDVLKSEEAHVESFSKES 318


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -2

Query: 741 SSVKSSFLSEKNTLRSLVRTTSKAHIQSVSHTSAQF 634
           SS KSS  S K++ RS  RTTS    ++ SH S+ +
Sbjct: 157 SSSKSSSSSSKSSSRSSSRTTSH---RTTSHKSSSY 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,452
Number of Sequences: 5004
Number of extensions: 49859
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)