Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B10
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0578 + 5139324-5140190                                           29   3.2  
07_03_1739 - 29148685-29149017,29149564-29149726,29149844-291500...    28   7.3  
03_05_0781 + 27654764-27655429,27655902-27656004,27656535-276565...    28   7.3  
04_04_0146 + 23106325-23108154                                         28   9.7  

>08_01_0578 + 5139324-5140190
          Length = 288

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 282 YKNSYTIDNGKTNATKENSNIVEXGEINVKLATSHQPR 169
           Y N+Y I +G  NAT +   + E  E+ V L T  +PR
Sbjct: 222 YDNNYCIVSGMWNATLDRHRVFEAMEMVVFLRTGVRPR 259


>07_03_1739 -
           29148685-29149017,29149564-29149726,29149844-29150028,
           29150708-29150977
          Length = 316

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -3

Query: 494 PPFR-EGGTGGILISRTSARDFAGCAGASSTP 402
           PP+   GG+GG++   +SA  ++G  G+SS P
Sbjct: 44  PPYGGAGGSGGLVRPPSSAAGYSGGGGSSSPP 75


>03_05_0781 +
           27654764-27655429,27655902-27656004,27656535-27656590,
           27656895-27657059,27657078-27657083,27657657-27657770,
           27658170-27658262
          Length = 400

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 406 VELAPAHPAKSRADVLLIKIPPVP--PSRNG 492
           + L P  P + R  + L+K PP P  PSR G
Sbjct: 17  LSLPPRRPVQPRGGIFLLKPPPPPPFPSRRG 47


>04_04_0146 + 23106325-23108154
          Length = 609

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -1

Query: 478 AAQAEF*LAEHPLVTSLDAPVPVLRHAISFTRIKFWSCRCLSPCSLSNVQITAKMR 311
           A++    L  HP      AP P+LR   +FT   F S   L+P SL  + + +  R
Sbjct: 49  ASEVALALPVHPAPLPSAAPAPLLRLLPAFTSDHFLSLLRLNPLSLPPLPLHSLFR 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,908,330
Number of Sequences: 37544
Number of extensions: 341368
Number of successful extensions: 867
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)