Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B09
         (771 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    32   0.006
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    30   0.018
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    28   0.095
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    28   0.095
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    27   0.13 
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    26   0.29 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   0.88 
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    23   2.0  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    23   2.0  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    23   3.6  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    23   3.6  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    22   4.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   6.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   6.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.2  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 31.9 bits (69), Expect = 0.006
 Identities = 14/62 (22%), Positives = 25/62 (40%)
 Frame = +3

Query: 489 KNIKTSRANDLSLECHDCGELFKSKCKLRVHWKRAHQSSYLKCERCKRQFKSFKAYNLHK 668
           +N + +   +   EC +C + F     L+ H +        +CE C RQF        H 
Sbjct: 151 QNHERTHTGEKPFECQECHKRFTRDHHLKTHMRLHTGERPYRCEHCDRQFVQVANLRRHL 210

Query: 669 KI 674
           ++
Sbjct: 211 RV 212



 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/37 (21%), Positives = 16/37 (43%)
 Frame = +3

Query: 531 CHDCGELFKSKCKLRVHWKRAHQSSYLKCERCKRQFK 641
           C  C   F    +L+ H          +C++C+ +F+
Sbjct: 221 CEHCSMKFSDSNQLKAHVLIHTNEKPFECDKCRGRFR 257


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 30.3 bits (65), Expect = 0.018
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +3

Query: 528 ECHDCGELFKSKCKLRVHWKRAHQSSYLKCERCKRQFKSFKAYNLHKKI 674
           EC +C + F     L+ H +        +CE C RQF        H ++
Sbjct: 11  ECQECHKRFTRDHHLKTHMRLHTGERPYRCEHCDRQFVQVANLRRHLRV 59


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 27.9 bits (59), Expect = 0.095
 Identities = 11/47 (23%), Positives = 17/47 (36%)
 Frame = +3

Query: 531 CHDCGELFKSKCKLRVHWKRAHQSSYLKCERCKRQFKSFKAYNLHKK 671
           C DC + F     L  H +        +C  C R+F    +   H +
Sbjct: 24  CIDCNKSFSQAANLTAHVRTHSGEKPFRCPVCDRRFSQSSSVTTHMR 70


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 0.095
 Identities = 11/47 (23%), Positives = 17/47 (36%)
 Frame = +3

Query: 531 CHDCGELFKSKCKLRVHWKRAHQSSYLKCERCKRQFKSFKAYNLHKK 671
           C DC + F     L  H +        +C  C R+F    +   H +
Sbjct: 280 CIDCNKSFSQAANLTAHVRTHSGEKPFRCPVCDRRFSQSSSVTTHMR 326


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +3

Query: 579 HW--KRAHQS-SYLKCERCKRQFKSFKAYNLHKK 671
           HW  K A Q+ + LKC  CK+ F S  A   H K
Sbjct: 365 HWLNKGAEQAKNVLKCVWCKQSFPSLAAMTTHMK 398



 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 525 LECHDCGELFKSKCKLRVHWKRA-HQSSYLKCER 623
           L+C  CG+ F+S  ++  H ++  H ++ +  E+
Sbjct: 479 LKCMWCGQSFRSLAEMTSHMQQTQHYTNIISQEQ 512


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 23/96 (23%), Positives = 42/96 (43%)
 Frame = +3

Query: 351 TLINDTFKNPLIPKVDIKEELSFDNNCEFDTSFHENSVETEFEIEDKNIKTSRANDLSLE 530
           T + D  K+P I    +    S DN+ E      + S  ++ +    NI+  + +D + +
Sbjct: 79  TPVIDPAKDPAIYSNLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIE-HKLSDPN-Q 136

Query: 531 CHDCGELFKSKCKLRVHWKRAHQSSYLKCERCKRQF 638
           C  C  +   K  L++H++        KC+ C R F
Sbjct: 137 CVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAF 172


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 711 IEGEGKNRMFYCKDCDYKSI 770
           +   GK + F CK CD+ +I
Sbjct: 193 VNSHGKIKTFKCKQCDFVAI 212



 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
 Frame = +3

Query: 504 SRANDLSLECHDCGELFKSKCKLRVHWKRAHQSSY-LKCERCKRQFKSFKAYNLH 665
           + A     +C+ C     +K  L  H K +H + Y   C  C    K   +  +H
Sbjct: 252 NHAGSKPFQCNKCDYTCVNKSMLNSHMK-SHSNVYRYSCRDCSYATKYCHSLKIH 305



 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 504 SRANDLSLECHDCGELFKSKCKLRVHWKR 590
           S +N     C DC    K    L++H +R
Sbjct: 280 SHSNVYRYSCRDCSYATKYCHSLKIHLRR 308


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -2

Query: 338 FTFLFELYSLFQFVKTLVADTVG*GV--TFNYFYFCD*YYQIRYRATVFYMEQ 186
           F ++ +   LF  +++   DT    V  TFN FY C  +Y +     +F   Q
Sbjct: 290 FGYVIDTMYLFIHIRSRQEDTDTLVVIYTFNLFYLCFCFYWLLVMVAMFSRTQ 342


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -2

Query: 338 FTFLFELYSLFQFVKTLVADTVG*GV--TFNYFYFCD*YYQIRYRATVFYMEQ 186
           F ++ +   LF  +++   DT    V  TFN FY C  +Y +     +F   Q
Sbjct: 246 FGYVIDTMYLFIHIRSRQEDTDTLVVIYTFNLFYLCFCFYWLLVMVAMFSRTQ 298


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -3

Query: 154 KQTRQTLNEFLLXXSILDTIYNINCYVFVSILFTLHCVTIVXYELALL 11
           ++TRQ ++ FL+       I N+N Y  V+       VT +   L +L
Sbjct: 358 QKTRQEVHMFLMAIEKNPPIMNLNGYANVNRKLISSTVTSIATYLVML 405


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -3

Query: 154 KQTRQTLNEFLLXXSILDTIYNINCYVFVSILFTLHCVTIVXYELALL 11
           ++TRQ ++ FL+       I N+N Y  V+       VT +   L +L
Sbjct: 358 QKTRQEVHMFLMAIEKNPPIMNLNGYANVNRKLISSTVTSIATYLVML 405


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
 Frame = +3

Query: 504 SRANDLSLECHDCGELFKSKCKLRVHWKRAHQSSY-LKCERCKRQFKSFKAYNLH 665
           + A     +C+ C     +K  L  H K +H + Y   C  C    K   +  +H
Sbjct: 10  NHAGSKPFQCNKCDYTCVNKSMLNSHMK-SHSNVYRYSCRDCSYATKYCHSLKIH 63



 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 504 SRANDLSLECHDCGELFKSKCKLRVHWKR 590
           S +N     C DC    K    L++H +R
Sbjct: 38  SHSNVYRYSCRDCSYATKYCHSLKIHLRR 66


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 243 VEIVKGDSLPDCIC 284
           +++VKG  L +CIC
Sbjct: 192 LDVVKGAMLTNCIC 205


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 243 VEIVKGDSLPDCIC 284
           +++VKG  L +CIC
Sbjct: 192 LDVVKGAMLTNCIC 205


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 243 VEIVKGDSLPDCIC 284
           +++VKG  L +CIC
Sbjct: 192 LDVVKGAMLTNCIC 205


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 243 VEIVKGDSLPDCIC 284
           +++VKG  L +CIC
Sbjct: 192 LDVVKGAMLTNCIC 205


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,339
Number of Sequences: 336
Number of extensions: 4335
Number of successful extensions: 33
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)