Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B09
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    27   2.2  
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    27   3.9  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    27   3.9  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   5.2  
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   9.1  

>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 456 NSVETEFEIEDKNIKTSRANDLSLECHDCGE 548
           N +   FE+ +K ++++ A  L   C+DC E
Sbjct: 514 NYISAGFEVANKEVQSAAAQALKHFCYDCRE 544


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +3

Query: 303 LEKAVKFKQKCEHSYFTLINDTFKNPLIPKVDIKEELSFD-NNCEF---DTSFHENSVET 470
           L K V FK+   ++ F      FKNP I  +D++ EL  + +N E        ++N V+ 
Sbjct: 215 LVKGVAFKKTFSYAGFEQQPKFFKNPKILCLDVELELKAEKDNAEVRVDKVQEYQNIVDA 274

Query: 471 EFEI 482
           E+ I
Sbjct: 275 EWRI 278


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
 Frame = +3

Query: 489 KNIKTSRANDLSLECH--DCGELFKSKCKLRVHWKRAHQS-SYLKCERCKRQFKSFKAYN 659
           K  +  R  D    C   DC + F  K  LR H +R H++     C  C R F      N
Sbjct: 14  KRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRH-ERTHENVKAFSCSFCNRAFARSDVLN 72

Query: 660 LH 665
            H
Sbjct: 73  RH 74


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +3

Query: 306 EKAVKFKQKCEHSYFTLINDTFKNPLIPKVDIKEELSFDNNCEFDTSFHENSVETEFE 479
           +K V      E +    I+D   + +   +DIKE+ +FD+  E   +   +S E++ E
Sbjct: 223 KKFVPLSSPEESNESEFIDDDESDEVASIIDIKEDETFDSKVEIPEAAPSSSTESDEE 280


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 216 ISRDRFLHGTMTSNHHSGNIPNKHDKL*TNSCXLLPYWI 100
           +S   + H    + HH  +I + +  L  ++   LPYWI
Sbjct: 354 LSVKEYYHYYRNAYHHIDSISHVNQSLKEDALRTLPYWI 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,545
Number of Sequences: 5004
Number of extensions: 63826
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)