Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B07
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   4.0  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   5.3  
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    25   7.0  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    25   7.0  
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    25   9.2  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    25   9.2  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/63 (23%), Positives = 26/63 (41%)
 Frame = +3

Query: 84   IKKNRKLAFCPSL*VWEIEYSSXPRNFRKNRYKVFASLQSFNYPAIFIEHSIPSLFQTKL 263
            + +++   FC  +     E  S  ++     +KV++ L  F     F   +    F TK 
Sbjct: 1242 LNRSKAFLFCLEMLKEVKELGSTFKSISSTSFKVYSQLTIFANRVSFNNSTAIPFFSTKS 1301

Query: 264  VLW 272
            VLW
Sbjct: 1302 VLW 1304


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 172 TGTKFLLHCNHSIILRFSSNIPFLLFSKQN*YYGFSKWQTRNFTQATRFTANN 330
           T  KFL   N+   +   SN P    S Q  ++G  K   +N  +AT   +N+
Sbjct: 130 TTFKFLTRKNNPSSMSLVSNYPLDAISSQQKFHGNDKTLEKNSAKATINKSNS 182


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 202 DCSEAKTLYRFLRKLRGXEEYSISHTYREG 113
           DC+ AKTL++ +RKL   +    +  +R+G
Sbjct: 209 DCTTAKTLFKQVRKLENTKNQG-NDLFRQG 237


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 260 ISTMDSVSGKQETSH-KPQDSLQITESCQPDSGDFVMPSVLELVEERAHLQEL 415
           I  MD ++ +    H  PQ  +Q  +S +  SG+F + + LE+   RA L  +
Sbjct: 135 IGVMDGIAHRITDLHGNPQSHIQKLKSLRDCSGNFSLQNALEMA--RASLSHI 185


>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 386 VEERAHLQELDRELQALH 439
           +EERA L E  +EL+ALH
Sbjct: 119 IEERAKLIEDSKELEALH 136


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -1

Query: 452 ILVVCVELGVLYPALGGELSPLQAPTQMASQNLHCLADNFQLFAVNLVACVKFL 291
           I V C  + V Y  + G+L P  AP+   S  +      + +FA+ ++  + FL
Sbjct: 103 IAVKCFGVAVSYLVIVGDLMPQIAPSLGLSSPMFLRRQTWIVFALFVLTPLSFL 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,650
Number of Sequences: 5004
Number of extensions: 56234
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)