Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_B07
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1183 - 31537196-31537290,31537665-31537986,31538176-315382... 30 1.3
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 29 3.1
10_08_0851 - 21065832-21065948,21066361-21066705,21067181-210674... 28 5.4
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199... 28 7.2
03_05_0629 + 26248960-26249236,26249766-26249894,26250291-262508... 28 7.2
03_05_0209 + 22014556-22015308 27 9.5
>04_04_1183 -
31537196-31537290,31537665-31537986,31538176-31538277,
31538826-31539071,31539385-31539506,31539588-31540344,
31540447-31540770,31540872-31541052,31541208-31541602,
31541877-31541942,31542225-31542377,31542593-31542691,
31542776-31542982,31543432-31543572,31543852-31544019,
31544302-31544395,31544479-31544585,31545140-31545274,
31545549-31545656,31545975-31546049,31546197-31546262,
31546500-31546556,31546678-31546702,31546809-31546889,
31546966-31547080,31547211-31547370,31547444-31547483,
31547599-31547780,31547905-31548234
Length = 1650
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -1
Query: 458 IPILVVCVELGVLYPALGGELSPLQAPTQMA 366
IP++V V GV Y LGG+L+P +A T ++
Sbjct: 534 IPVIVTVVSFGV-YSLLGGDLTPAKAFTSLS 563
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 129 WEIE-YSSXPRNFRKNRYKVFASLQSFNY 212
WE + +S+ NF++ R KVF LQ FN+
Sbjct: 3699 WEQDPHSASIENFKRTRQKVFKLLQCFNF 3727
>10_08_0851 -
21065832-21065948,21066361-21066705,21067181-21067489,
21067574-21067648,21067754-21067917,21067994-21068432
Length = 482
Score = 28.3 bits (60), Expect = 5.4
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +2
Query: 239 SFSFPNKISTMDSVSGKQETSHKPQDSLQITESCQPDSGDFVMPSVLELVEERAHLQELD 418
SF STM S S ++ T H+ +D + C PD G + EL ++R ++
Sbjct: 246 SFGSATSSSTMSSSSFRRST-HRNEDRWWLPVPCVPDGG-ISGKARKELQQKRDCATQIH 303
Query: 419 RELQALHT--LPELESPTS 469
+ A++T L ++E P S
Sbjct: 304 KAAVAINTGVLGDMEVPDS 322
>03_06_0353 -
33317015-33318235,33318567-33318824,33319587-33319904,
33319949-33320011,33320103-33320496,33320684-33320796,
33320932-33321639,33321667-33323199,33323395-33323607,
33323718-33324700,33324890-33325423,33325694-33325820,
33326083-33326162,33327347-33327377,33327949-33328053,
33328119-33328124,33328349-33328985,33329144-33329478,
33330394-33331113
Length = 2792
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 218 DFHRTFHSFSFPNKISTMDSVSGKQETSHKPQ-DSLQITES 337
D + S +P+K M+ + K ETS KP DS ++ ES
Sbjct: 457 DVDKRVSSCPYPSKTEEMERLGLKSETSKKPPLDSSKVKES 497
>03_05_0629 +
26248960-26249236,26249766-26249894,26250291-26250847,
26250933-26251250
Length = 426
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 205 SIILRFSSNIPFLLFSKQN*YYGFSKWQTRNF 300
++ILRFS ++PF LF + + F+K T +
Sbjct: 296 ALILRFSRDLPFCLFLQTVAFVAFNKVMTAQY 327
>03_05_0209 + 22014556-22015308
Length = 250
Score = 27.5 bits (58), Expect = 9.5
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Frame = +2
Query: 209 LSCDFHRTFHSFSFPNKISTM---DSVSGKQETSHKPQ--DSLQITESCQPDSGDFVMPS 373
L+ D++R F S S T V KQE H + TESC PD +
Sbjct: 83 LAADYYRCFFSLSPSTSDFTACGHTGVGDKQEQHHHQVGVEPSSATESCVPDHSEAPYRD 142
Query: 374 VLELVEERAHLQELDRE 424
+ E+ +H + +D E
Sbjct: 143 NDDASEDCSHGERMDGE 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,745,146
Number of Sequences: 37544
Number of extensions: 330574
Number of successful extensions: 799
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -