Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B07
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr...    31   0.92 
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical...    31   0.92 
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    30   1.6  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      30   1.6  
Z73105-1|CAA97442.2|  525|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AY515708-1|AAR99658.1|  525|Caenorhabditis elegans bestrophin 1 ...    29   2.8  
AF067940-4|AAC19201.1|  487|Caenorhabditis elegans Hypothetical ...    29   3.7  
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF162674-1|AAF80462.1|  575|Caenorhabditis elegans CNT-like nucl...    27   8.6  
AF016413-4|AAM29683.1|  454|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF016413-3|AAB65256.3|  555|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical
           protein Y6B3B.1 protein.
          Length = 1829

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 356 DFVMPSVLELVEERAHLQELDRELQALHTLPELESPTSQ 472
           DF+   V E+VEE   L E  ++ +ALH L     PT++
Sbjct: 519 DFIEDPVTEVVEEVTELPEDRKDPEALHELENHNDPTAE 557


>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
           protein Y6B3B.1 protein.
          Length = 1829

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 356 DFVMPSVLELVEERAHLQELDRELQALHTLPELESPTSQ 472
           DF+   V E+VEE   L E  ++ +ALH L     PT++
Sbjct: 519 DFIEDPVTEVVEEVTELPEDRKDPEALHELENHNDPTAE 557


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
           guidance protein 2,isoform a protein.
          Length = 2886

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 224 HRTFHSFSFPNKISTMDSVSGKQETSHKPQDSL 322
           H T  S SFPN +++  S+     + H+P  SL
Sbjct: 715 HSTHISVSFPNTVTSASSILSNSSSPHQPTPSL 747


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 224 HRTFHSFSFPNKISTMDSVSGKQETSHKPQDSL 322
           H T  S SFPN +++  S+     + H+P  SL
Sbjct: 715 HSTHISVSFPNTVTSASSILSNSSSPHQPTPSL 747


>Z73105-1|CAA97442.2|  525|Caenorhabditis elegans Hypothetical
           protein R13.3 protein.
          Length = 525

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = +2

Query: 260 ISTMDSVSGKQETSHKPQDSLQITESCQPDSGDFVMPSVLELVEERAHLQELDRELQA 433
           +ST++  + K+++S     S+ + E     S + V+P V+E  EER+ + E D+   A
Sbjct: 469 LSTLEMTAPKRKSSTGKLGSMNVAEEQHKLSAE-VLPIVIEEDEERSKMLEKDKNKNA 525


>AY515708-1|AAR99658.1|  525|Caenorhabditis elegans bestrophin 1
           protein.
          Length = 525

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = +2

Query: 260 ISTMDSVSGKQETSHKPQDSLQITESCQPDSGDFVMPSVLELVEERAHLQELDRELQA 433
           +ST++  + K+++S     S+ + E     S + V+P V+E  EER+ + E D+   A
Sbjct: 469 LSTLEMTAPKRKSSTGKLGSMNVAEEQHKLSAE-VLPIVIEEDEERSKMLEKDKNKNA 525


>AF067940-4|AAC19201.1|  487|Caenorhabditis elegans Hypothetical
           protein F36F12.2 protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 371 SVLELVEERAHLQELDRELQALHTLPELESPTSQHP 478
           ++ EL+ ER HL+E+D +  +  + PE  S TS  P
Sbjct: 371 NITELISER-HLKEIDEDFLSTISQPEFTSLTSSLP 405


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical protein
            H03E18.1 protein.
          Length = 1147

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/60 (23%), Positives = 26/60 (43%)
 Frame = +2

Query: 320  LQITESCQPDSGDFVMPSVLELVEERAHLQELDRELQALHTLPELESPTSQHPSTNKGDQ 499
            ++ITES  PDS    +P  +E     + + +   +     ++PE E        T+ G +
Sbjct: 925  MEITESTAPDSTSSTIPENIETESTSSEITKQTAKTSMKSSIPEAEGLEDDEVETDIGQE 984


>AF162674-1|AAF80462.1|  575|Caenorhabditis elegans CNT-like
           nucleoside transporter protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -1

Query: 338 NFQLFAVNLVACVKFLVCHLLNP*Y*FCLEKRRNGMFDENRRIIE*LQ*SKNFVPVFTKI 159
           N+Q  A  +   + F +C+LLN        K    ++D+  R +E +   K FVP+  KI
Sbjct: 70  NYQKAAPLIYVTLFFWICYLLNL---IVGTKTFRAVYDDVGRKLEEITEQKKFVPLSLKI 126

Query: 158 A 156
           A
Sbjct: 127 A 127


>AF016413-4|AAM29683.1|  454|Caenorhabditis elegans Hypothetical
           protein F27E11.2b protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -1

Query: 338 NFQLFAVNLVACVKFLVCHLLNP*Y*FCLEKRRNGMFDENRRIIE*LQ*SKNFVPVFTKI 159
           N+Q  A  +   + F +C+LLN        K    ++D+  R +E +   K FVP+  KI
Sbjct: 70  NYQKAAPLIYVTLFFWICYLLNL---IVGTKTFRAVYDDVGRKLEEITEQKKFVPLSLKI 126

Query: 158 A 156
           A
Sbjct: 127 A 127


>AF016413-3|AAB65256.3|  555|Caenorhabditis elegans Hypothetical
           protein F27E11.2a protein.
          Length = 555

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -1

Query: 338 NFQLFAVNLVACVKFLVCHLLNP*Y*FCLEKRRNGMFDENRRIIE*LQ*SKNFVPVFTKI 159
           N+Q  A  +   + F +C+LLN        K    ++D+  R +E +   K FVP+  KI
Sbjct: 70  NYQKAAPLIYVTLFFWICYLLNL---IVGTKTFRAVYDDVGRKLEEITEQKKFVPLSLKI 126

Query: 158 A 156
           A
Sbjct: 127 A 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,919,285
Number of Sequences: 27780
Number of extensions: 308982
Number of successful extensions: 905
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)