Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B07
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.82 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.82 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.8  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 293 ETSHKPQDSLQITESCQPDSGDFVMPSVLEL 385
           + + KP  +L I +  + D+ D   P+VLE+
Sbjct: 87  QANEKPWSTLPIEDLTKSDNEDITYPTVLEV 117


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 293 ETSHKPQDSLQITESCQPDSGDFVMPSVLEL 385
           + + KP  +L I +  + D+ D   P+VLE+
Sbjct: 125 QANEKPWSTLPIEDLTKSDNEDITYPTVLEV 155


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 485 WCWDAEK*EIP 453
           WCWD  K  IP
Sbjct: 458 WCWDTRKEYIP 468


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 416 DRELQALHTLPELESPTSQHP 478
           DRE  +++ L   E+P + HP
Sbjct: 63  DREQPSVYPLLRFENPETHHP 83


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 508 FCPCFT-PYTELTFASS*LHKDLF 576
           + PC T PY+++TF  +   K LF
Sbjct: 228 YYPCCTEPYSDITFNITMRRKTLF 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,253
Number of Sequences: 438
Number of extensions: 3776
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)