Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B06
         (824 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   5.1  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   9.0  

>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 455 PVKMHTKESTLEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFLDS 604
           P+    K    + + N ED  ED+   +DY  D +L+S+   ++ + L S
Sbjct: 195 PIGTVFKIGDADGTGNCED-PEDVPGCEDYYGDLDLKSIRKSELLAGLQS 243


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 330 ISNSKSWRVRIR*RSKF*KLFSRRNSA*RVMQ*DLLRFWIY 452
           I N   WR+      +  K+F  R+   +V Q  +L+ ++Y
Sbjct: 98  ILNQDKWRLLNNNFQQIDKIFKTRDDRVKVYQAPVLQLFLY 138


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,427
Number of Sequences: 336
Number of extensions: 2741
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22621642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)