Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_B06
(824 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 30 0.46
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 29 0.80
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 29 1.1
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 29 1.1
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 28 1.8
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 28 1.8
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 27 2.4
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 27 2.4
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 27 2.4
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 27 2.4
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.2
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 27 3.2
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 27 4.3
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 27 4.3
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 27 4.3
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 27 4.3
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 26 5.6
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.6
SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr ... 26 5.6
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 26 5.6
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz... 26 5.6
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 7.5
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 26 7.5
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 25 9.9
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 25 9.9
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 29.9 bits (64), Expect = 0.46
Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Frame = +2
Query: 266 SVIFVSLFLLANAQRTSNNNRD----------LEFQELARQNKITKQILEAFLQKKLGVK 415
+ +FVS A+ + +NNNR L+ E +K K+ LEA+ +L +K
Sbjct: 48 ATLFVSFLTSASGEIATNNNRKILMPQDVLNALDEIEYPEFSKTLKKHLEAY---ELALK 104
Query: 416 SNAVRPPSVLDI---LPVKMHTKEST-LEQSNNEEDFQEDLQETQDYVEDDNLQSVES-E 580
++ P+V D+ K+ ++T L++ +E + + ++ + N+ VE E
Sbjct: 105 EKRLKLPNVSDVDNRKKAKIDAHDTTPLDEEKDELEEERIAEDIAQNEVEQNIDDVEDLE 164
Query: 581 QIDSFLDS 604
+++ LD+
Sbjct: 165 EVNDTLDA 172
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 29.1 bits (62), Expect = 0.80
Identities = 26/107 (24%), Positives = 48/107 (44%)
Frame = +2
Query: 245 LFSKNVPSVIFVSLFLLANAQRTSNNNRDLEFQELARQNKITKQILEAFLQKKLGVKSNA 424
L SKN P +I S+++L + + RD + RQ K+ + E LQ+ +
Sbjct: 566 LESKN-PILIEPSIYILVHIAASDGELRD----SILRQTKLLLLVKEIMLQE-----AQR 615
Query: 425 VRPPSVLDILPVKMHTKESTLEQSNNEEDFQEDLQETQDYVEDDNLQ 565
++P + + + ES E E+DF +++ D E+D +
Sbjct: 616 LKPEQ----MSTNVSSPESDSEMDLQEDDFDREMRPPFDIYEEDTYE 658
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 326 RDLEFQELARQNKITKQILEAFLQKK 403
R+ E QEL +Q KI +ILE+ LQ++
Sbjct: 114 REQELQELEKQEKIEAEILESRLQEQ 139
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 431 PPSVLDILPVKMHTKEST-LEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFLDSI 607
P +V +P T ++T + + E D D+++T+ +ED + Q + + + +DS
Sbjct: 374 PVAVAKRVPKGTSTYQATWIPDEDEESDQYSDVEDTEVIIEDQDNQEISNHVAEEKIDSD 433
Query: 608 E 610
E
Sbjct: 434 E 434
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 27.9 bits (59), Expect = 1.8
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 347 LARQNKITKQILEAFLQKKLGVKSNAVRPPSVLDI-LPVKMHTKESTLEQSNNEEDFQED 523
L +K KQ LE K L V+ A P +LD+ H S + +N ++DF
Sbjct: 108 LKYSSKTAKQYLEKL--KSLAVEDEA-NYPDILDMDFLSNTHEGSSAADTTNEDDDFFSA 164
Query: 524 LQETQDYVEDDNL 562
+ DDNL
Sbjct: 165 WDKASVKKSDDNL 177
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 27.9 bits (59), Expect = 1.8
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = +2
Query: 314 SNNNRDLEFQELARQ-NKITKQILEAFLQKKLGVKSNAVRPPSVLDILPVKMHTKESTLE 490
+N EF L Q IT Q L + + ++ + + + + L L K+ + E
Sbjct: 315 ANKKNSEEFSTLNLQLESITSQYLFSSKEAEIVFRKSRIEFMNKLKALQQKLENERIVEE 374
Query: 491 QSNNEEDFQEDLQETQDYVEDDNLQSVESE 580
N QED Q T D +DD+ S ++
Sbjct: 375 IKKN--GIQEDSQSTDDSSKDDDNNSESND 402
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 383 EAFLQKKLGVKSNAVRPPSVLDILPVKMHTKESTLEQSNNEEDFQEDLQETQDYVEDDNL 562
E LQ K + SV DI + + L ++ E+D +E+ ETQ N
Sbjct: 253 ENLLQDKAEAEEKVSADASVQDIAEKESLDADKELATNDQEDDEEENQAETQKDGAISNN 312
Query: 563 QSVESE 580
++++SE
Sbjct: 313 ENMQSE 318
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.5 bits (58), Expect = 2.4
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Frame = +2
Query: 248 FSKNVPSVIFVSLFLLANAQRTSNNNRDLE-FQELARQNKITKQILEAFLQKKLGVKSNA 424
FS + S + S FL N + N N DL F L IT+ A ++ +
Sbjct: 213 FSGYIKSHMSTSNFL--NGEPDLNVNVDLSPFPNLPATVPITQAASTANAFQQPSNQFQT 270
Query: 425 VRPPSVLDILPVKMHTKESTLEQSNNEEDFQEDLQ 529
+ PS LD PV + E T +SN + + DLQ
Sbjct: 271 QKLPSGLDTRPVSSYPDELTQLESNPDSFSRLDLQ 305
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 9 PADGSVSKPKAAQHALQRYRGRSSPRKHXIEILNSNISXTKK 134
PAD + + + G +SPRK E ++SNIS T++
Sbjct: 151 PADLRIVEATELEIDESNLTGENSPRKKSSEAISSNISLTER 192
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 488 EQSNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFLDSIEGM-YSIY 628
+ NEED +ED +ET + ED+++ + + ID S+ + SIY
Sbjct: 371 DDDENEED-EEDSEETSESEEDESVNDEKPQVIDQTNASLVNLRKSIY 417
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 488 EQSNNEEDFQEDLQETQDYVEDDNLQSVESEQ 583
++ NE+ F+E++QE ++ ED E EQ
Sbjct: 4157 DEKMNEDGFEENVQENEESTEDGVKSDEELEQ 4188
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 27.1 bits (57), Expect = 3.2
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Frame = +2
Query: 278 VSLFLLANAQRTSNNNRDLEFQE-----LARQNKITKQILEAFLQKKLGVKSNAVRPPSV 442
+SL + N +T NR+ E L +QNK ++LE + + K+ +
Sbjct: 557 ISLDIETNKAQTEQVNREYSILEATLNALQKQNKQKGEVLEQVVAESEAAKNMVESSNAS 616
Query: 443 LDILPVKMHTKESTLEQSNNEEDFQEDLQETQDYVE-DDNLQSVESEQID 589
+ L ++ KE TL Q + + D + TQ V D+ ++V ++D
Sbjct: 617 IQQLKSEVADKEQTLAQLHLQLD-----EMTQRLVSLDEESKAVSQRKLD 661
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 26.6 bits (56), Expect = 4.3
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Frame = +2
Query: 305 QRTSNNNRDLEFQELARQNKITKQILEAFLQKKLGVKSNAVRPPSVLDILPVKMHTKEST 484
Q S D Q L + + ++ F G+KS +++ L V + KES
Sbjct: 287 QIKSAEELDSAIQVLEERYRTMQRDEVKFQSAMSGMKSKMESRTNLMKQLQVNIEEKESQ 346
Query: 485 LEQSNNEEDFQEDLQETQDY-VEDDNLQSVESEQIDSFLDSI 607
L+ + D + E QD + + E EQ+D L+ I
Sbjct: 347 LQLLKEKRDSLKYQVENQDISISEFEKMVSEREQLDRNLNMI 388
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 446 DILPVKMHTKESTLEQSNNEEDFQEDLQETQDYVE-DDNLQSVESEQ 583
D L + ++ +T E +++ED+Q + +YV +D L+S+E+ Q
Sbjct: 112 DFLEANVKSQFTTCENKDSKEDYQILHNKRLEYVSFNDELKSLETGQ 158
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 437 SVLDILPVKMHTKESTLEQSNNEEDFQEDL 526
SV +LP++ +E+ E S NE+DF ++L
Sbjct: 282 SVNSMLPLQTDFREAYEESSTNEQDFIQNL 311
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +2
Query: 431 PPSVLDILPVKMHTKESTLEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFLDSIE 610
P S+L +K H T +S + E+F + + + +D+ + L++V +E + D+ E
Sbjct: 290 PVSLLIFKNLKFHGFWVTKWKSEHPEEFLKIIHKVEDFYRNGTLKTVNTELVSLKEDADE 349
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 467 HTKESTLEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFLDSIEGM 616
HT +++L+ NN+E + Y E +N+ V Q + I G+
Sbjct: 36 HTTQASLQADNNDEQSNGQAPFSTTYSEINNIHDVPGNQDEWSSSPIAGI 85
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +2
Query: 287 FLLANAQRTSNNNRDLEFQELARQNKITKQILEAFLQKKLGVKSNAVRPPSVLDILPVK 463
FL + +N D E ++ K +++AFLQ K A + PS PV+
Sbjct: 238 FLESKVLPQNNETSDEENVDVKPAAGTVKNVMQAFLQPATPAKDTASKEPSKSSQQPVR 296
>SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 171
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
Frame = -1
Query: 392 EKLLEFASLSYSDAPALG--IRDL 327
E+ L F+SLSY+D +LG +RDL
Sbjct: 34 EEALRFSSLSYADCYSLGVIVRDL 57
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 26.2 bits (55), Expect = 5.6
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +2
Query: 458 VKMHTKESTLEQSNNEEDFQEDLQETQDYVEDDNLQS---VESEQIDSFL-DSIEGMYSI 625
V+ +E T NEE+ E +T+ +DN+++ SE+ + FL SI+G+ ++
Sbjct: 319 VEKAIEEETKSVQANEENETEKPSQTESTTNNDNIKAPSESSSEESNIFLTTSIDGVMNV 378
Query: 626 Y 628
+
Sbjct: 379 W 379
>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 26.2 bits (55), Expect = 5.6
Identities = 8/25 (32%), Positives = 19/25 (76%)
Frame = +2
Query: 479 STLEQSNNEEDFQEDLQETQDYVED 553
S+L+++NN E + D++ +D++E+
Sbjct: 133 SSLQKANNLEPVEADIRRARDFIEE 157
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 275 FVSLFLLANAQRTSNNNRDLEFQELARQNKIT 370
F+S+FLL ++ + D+ LARQN++T
Sbjct: 206 FISIFLLYVLFSSTKSIADIRQSYLARQNRLT 237
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.8 bits (54), Expect = 7.5
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +2
Query: 221 FKGAIKMYLFSKNVPSVIFVSLFLLANAQRTSNNNRDLEFQELARQNKITKQILEAFLQK 400
FK +KM S + ++ LF + R S NNR + +Q + ++ F +
Sbjct: 421 FKTFLKMIELSSLLQDIL-QDLFTVRALTRHSKNNRSISYQIIGFFTRLNSIRPVEFTEP 479
Query: 401 KLGVKS 418
LGV S
Sbjct: 480 ALGVAS 485
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 500 NEEDFQEDLQETQDYVEDDNLQSVESEQID 589
+E++ +E L+E E+D + ES Q+D
Sbjct: 49 DEQEIEEALEEDDTNYEEDIIDDEESAQVD 78
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 485 VYSLSCAF*QVIYPEPKEVSLHYSSRRVSSGEK 387
+YS+S ++++PEP V + SR ++ EK
Sbjct: 429 LYSMSRLVDRLVFPEPVTVLDDHKSRNLTKSEK 461
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,287
Number of Sequences: 5004
Number of extensions: 49104
Number of successful extensions: 213
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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