Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_B06
(824 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953... 32 0.48
10_07_0059 + 12475452-12475785,12475889-12476523 31 0.84
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 31 1.1
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 31 1.1
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201 31 1.1
08_01_1009 - 10211687-10212070,10212165-10212314,10213223-10214080 30 1.9
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 30 1.9
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 29 3.4
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 29 3.4
10_08_0497 - 18336819-18337140,18337226-18337360,18337579-183376... 28 7.8
09_04_0703 - 19614057-19614264,19615305-19615407,19615880-196159... 28 7.8
07_03_1228 - 25009736-25010965 28 7.8
>11_03_0066 +
9529969-9530166,9530271-9530450,9530559-9531287,
9531554-9531706,9531803-9532238,9532322-9532501,
9532643-9532889,9533090-9533123,9533385-9533489,
9533833-9533967,9534220-9534399,9534504-9534626
Length = 899
Score = 32.3 bits (70), Expect = 0.48
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +2
Query: 467 HTKESTLEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFLD 601
HTK EQ +E +ED E +D VED++ + VE + + F++
Sbjct: 79 HTKHKLSEQEPEDEVEEEDEDEYEDDVEDED-EEVEEDDDNDFME 122
>10_07_0059 + 12475452-12475785,12475889-12476523
Length = 322
Score = 31.5 bits (68), Expect = 0.84
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +2
Query: 467 HTKESTLEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSF 595
HTK++ + +++EDF+ +E D +DD+ ESE++D +
Sbjct: 42 HTKKNKRRRISDDEDFEAAFEEF-DAGDDDSDSDSESEEVDEY 83
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Frame = +2
Query: 326 RDLEFQELARQNKITKQI----LEAFLQKKLGVKSNAVRPPSVLDILPVKMHTKESTLEQ 493
RD ++L R KIT + LE +++L + V+ S P+ + T+++T ++
Sbjct: 162 RDTSGEQLGRGTKITLYLKDDQLEYLEERRL---KDLVKKHSEFISYPISLWTEKTTEKE 218
Query: 494 SNNEEDFQEDLQETQDYVEDDNLQSVESEQ 583
+++ED +E + VED + + E E+
Sbjct: 219 ISDDEDEEEKKDAEEGKVEDVDEEKEEKEK 248
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Frame = +2
Query: 326 RDLEFQELARQNKITKQI----LEAFLQKKLGVKSNAVRPPSVLDILPVKMHTKESTLEQ 493
RD ++L R KIT + LE +++L + V+ S P+ + T+++T ++
Sbjct: 162 RDTSGEQLGRGTKITLYLKDDQLEYLEERRL---KDLVKKHSEFISYPISLWTEKTTEKE 218
Query: 494 SNNEEDFQEDLQETQDYVEDDNLQSVESEQ 583
+++ED +E + VED + + E E+
Sbjct: 219 ISDDEDEEEKKDAEEGKVEDVDEEKEEKEK 248
>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
Length = 699
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/104 (22%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Frame = +2
Query: 326 RDLEFQELARQNKITKQI----LEAFLQKKLGVKSNAVRPPSVLDILPVKMHTKESTLEQ 493
RD ++L R KIT + LE +++L + ++ S P+ + T+++T ++
Sbjct: 162 RDTSGEQLGRGTKITLYLKDDQLEYLEERRL---KDLIKKHSEFISYPISLWTEKTTEKE 218
Query: 494 SNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFLDSIEGMYSI 625
+++ED +E + VED + + E E+ + + +S+
Sbjct: 219 ISDDEDEEEKKDAEEGKVEDVDEEKEEKEKKKKKIKEVSHEWSL 262
>08_01_1009 - 10211687-10212070,10212165-10212314,10213223-10214080
Length = 463
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2
Query: 437 SVLDILPVKMHTKESTLEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQI 586
S+LD + + E +L N+E++F ED +QD +++D+L S S +
Sbjct: 340 SILDPVSSEDEMDEDSL---NSEDEFDEDSLNSQDEIDEDSLNSEISSDL 386
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +2
Query: 461 KMHTKESTLE--QSNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFLD 601
K+ T E E Q + +ED E+L E QD ++D+ ++ + ++DS +D
Sbjct: 524 KLDTDEGMKEEDQLSGDEDDTEELDEDQDISDNDSEENDDELELDSDMD 572
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/69 (30%), Positives = 39/69 (56%)
Frame = +2
Query: 335 EFQELARQNKITKQILEAFLQKKLGVKSNAVRPPSVLDILPVKMHTKESTLEQSNNEEDF 514
+ QEL R + + +E+F+QK++ ++ + + S+ + +H ES L+QS + D
Sbjct: 1296 QLQELQRIQLLLDESIESFVQKEV-IEQSYI---SLQRAMEEVIHHLESQLDQS--KRDL 1349
Query: 515 QEDLQETQD 541
+ L ETQD
Sbjct: 1350 TQLLSETQD 1358
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 434 PSVLDILP--VKMHTKESTLEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFLDS 604
P V D LP + T E+ NE++ Q + TQ V DD LQ + + + +DS
Sbjct: 1952 PLVTDTLPSTAPIITAEAMSVDDRNEDNEQLESDTTQSSV-DDRLQQADQQSVKGSIDS 2009
>10_08_0497 -
18336819-18337140,18337226-18337360,18337579-18337673,
18337759-18337845,18337923-18338129,18338209-18338535,
18338711-18338803,18338861-18339175,18339283-18339792,
18339889-18339960,18341209-18341256,18341427-18341551,
18341640-18341661
Length = 785
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 470 TKESTLEQ---SNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFLD 601
T+E +E S++EED ED D EDD VE + D F+D
Sbjct: 697 TEEDIVEDLILSSDEEDEDEDKNMESD--EDDGSMPVEDDSDDDFVD 741
>09_04_0703 -
19614057-19614264,19615305-19615407,19615880-19615973,
19616216-19616229,19616384-19616595,19617653-19617940,
19618275-19618362,19618444-19618515,19618597-19618672,
19618755-19618813,19618953-19619016,19619253-19619402
Length = 475
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/52 (25%), Positives = 29/52 (55%)
Frame = +2
Query: 536 QDYVEDDNLQSVESEQIDSFLDSIEGMYSIY*EAKL*TVAFKKKVRDGFGEL 691
Q Y+ D + V ++Q + + ++ MY + +A ++A+ + + DG GE+
Sbjct: 71 QGYMPDGSNADVSADQYHHYKEDVKLMYDMGLDAYRFSIAWPRLIPDGRGEI 122
>07_03_1228 - 25009736-25010965
Length = 409
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = +2
Query: 473 KESTLEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQID 589
+E E+ ++EE+ +E+ +E +D ED+N + E E+++
Sbjct: 349 EEGAEEEEDDEEEDEEEEEEEEDIEEDENEE--EEEEVE 385
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,897,230
Number of Sequences: 37544
Number of extensions: 281919
Number of successful extensions: 901
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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