Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_B06
(824 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12) 33 0.28
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38) 31 0.86
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 30 2.6
SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043) 29 4.6
SB_3847| Best HMM Match : Sec1 (HMM E-Value=8.8e-14) 29 6.1
SB_17918| Best HMM Match : FtsK_SpoIIIE (HMM E-Value=1.3) 28 8.0
SB_12753| Best HMM Match : M (HMM E-Value=0.0006) 28 8.0
>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
Length = 1290
Score = 33.1 bits (72), Expect = 0.28
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Frame = +2
Query: 332 LEFQELARQNKIT--KQILEAFLQKKLGVKSNAVRPPSVLDILPVKMHTKESTLEQSNNE 505
L F E+ + +T K + KKL + N + V ++ T + S++E
Sbjct: 507 LSFDEIKKDAALTVAKSVQNKADFKKLDLNGNCLGDEGVEELKAFMKATPDILSSLSDDE 566
Query: 506 EDFQEDLQETQDYVEDDNLQSVESEQIDSFLDSIEGM 616
D ++D E QD +ED + E E++D S+EG+
Sbjct: 567 GD-EDDDDEDQD-LEDLGNEDSEGEEVDDLALSVEGV 601
>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
Length = 1301
Score = 31.5 bits (68), Expect = 0.86
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 458 VKMHTKESTLEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFL 598
+K H E +Q N++EDF+E+L++T+ E LQ + +D FL
Sbjct: 452 IKKHFPE---DQENSDEDFEEELRKTR-RKEMQKLQKKKGYSVDDFL 494
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +2
Query: 347 LARQNKITKQILEAFLQKKLGVKSNAVRPPSVLDILPVKMHTKESTLEQSNNEEDFQEDL 526
L N I K+ LE ++K +++ S LDIL ++ T+ LEQ + E D D
Sbjct: 1739 LEEANIIAKKSLEQLIKKHKELQAEHDSRASALDILKEELMTQARQLEQKDEEIDRHADT 1798
Query: 527 Q 529
+
Sbjct: 1799 E 1799
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +2
Query: 482 TLEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFLDSIEGMYSIY*E 634
T+ Q + EE+ +E+ +E +D ED+ + ++ ++ SF + + + Y E
Sbjct: 983 TVNQVDGEEEEEEEEEEEEDSYEDEYTEILQRRRVVSFNEEVTVQEAFYPE 1033
>SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +2
Query: 482 TLEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFLDSI 607
T+ Q + EE+ +E+ +E +D ED+ + ++ ++ SF + I
Sbjct: 339 TVNQVDGEEEEEEEEEEEEDSYEDEYTEILQRRRVVSFNEEI 380
>SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043)
Length = 831
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 449 ILPVKMHTKESTLEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQID 589
+LP M +K +SN EED +D + DY DD+ +S E++ +D
Sbjct: 675 MLPPTMTSKSDKTSESNKEEDSDDD--DDDDY-GDDSDKSNEAKVLD 718
>SB_3847| Best HMM Match : Sec1 (HMM E-Value=8.8e-14)
Length = 605
Score = 28.7 bits (61), Expect = 6.1
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Frame = +2
Query: 290 LLANAQRTSNNNRDLEFQELA-RQNKITKQILEAFLQKKLG-----VKSNAVRPPSVLDI 451
+L +A ++ RDL F + ++ KQI AF + K +K R P +
Sbjct: 327 VLNSADELFSDIRDLNFSAVGVHLSRKAKQISAAFEEHKSAKTVGEMKQYVQRLPYMQKA 386
Query: 452 -LPVKMH-TKESTLEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFLD 601
+ MH T +++ ++EDF+E ++ +E + Q +++E+I+S+++
Sbjct: 387 KASLAMHMTIAELIKEETDKEDFRESIR-----IEQEFAQGLDTEKINSYIE 433
>SB_17918| Best HMM Match : FtsK_SpoIIIE (HMM E-Value=1.3)
Length = 271
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 320 NNRDLEFQELARQNKITKQILEAFLQKKLGVKSNAVRPPSVLDIL 454
NNR LE R KIT+++ + ++ ++ +S A PS+ ++
Sbjct: 9 NNRVLEISSRVRSPKITRRLSQPCVKYRVCSRSQATGSPSIAALI 53
>SB_12753| Best HMM Match : M (HMM E-Value=0.0006)
Length = 304
Score = 28.3 bits (60), Expect = 8.0
Identities = 22/74 (29%), Positives = 38/74 (51%)
Frame = +2
Query: 311 TSNNNRDLEFQELARQNKITKQILEAFLQKKLGVKSNAVRPPSVLDILPVKMHTKESTLE 490
T N N LE + L++ +K + L L+ LG + A+R ++I + + T E
Sbjct: 130 TENQNIYLEREMLSKGSKEKIEELSTQLEHVLG-REEALR----VEIKTLNSQITQLTEE 184
Query: 491 QSNNEEDFQEDLQE 532
++ + DFQ+ LQE
Sbjct: 185 KATSSIDFQQQLQE 198
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,195,091
Number of Sequences: 59808
Number of extensions: 339869
Number of successful extensions: 1187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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