Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_B06
(824 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83122-10|CAB05601.1| 896|Caenorhabditis elegans Hypothetical p... 33 0.25
Z83122-9|CAB05598.1| 906|Caenorhabditis elegans Hypothetical pr... 33 0.25
U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical pr... 31 0.76
Z79639-4|CAB01917.2| 254|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z49911-6|CAA90132.1| 831|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical pr... 29 4.0
U53154-12|AAC25847.2| 380|Caenorhabditis elegans Serpentine rec... 29 4.0
AL132862-8|CAB60538.2| 284|Caenorhabditis elegans Hypothetical ... 29 5.3
AF099919-13|AAC68798.1| 636|Caenorhabditis elegans Hypothetical... 29 5.3
AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protei... 29 5.3
Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 7.1
U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical pr... 28 7.1
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass... 28 7.1
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 28 7.1
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 28 7.1
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 28 7.1
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 28 7.1
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 28 7.1
AF038621-4|AAK71387.2| 1064|Caenorhabditis elegans Hypothetical ... 28 7.1
Z68114-10|CAA92157.2| 322|Caenorhabditis elegans Hypothetical p... 28 9.3
Z47069-2|CAA87337.1| 313|Caenorhabditis elegans Hypothetical pr... 28 9.3
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 28 9.3
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 28 9.3
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 28 9.3
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 28 9.3
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 28 9.3
AF040653-6|AAB95032.1| 508|Caenorhabditis elegans F-box b prote... 28 9.3
>Z83122-10|CAB05601.1| 896|Caenorhabditis elegans Hypothetical
protein R11A5.1b protein.
Length = 896
Score = 33.1 bits (72), Expect = 0.25
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Frame = +2
Query: 224 KGAIKMYLFSKNVPSVIFVSLFLLANAQRTSNNNRDLEF-QELARQNKITKQILEA-FLQ 397
K A+K++L ++ I +F LA + + F + L +I Q +E F+
Sbjct: 477 KLAVKLWLVKRDDSEKIVQYVFQLARFDLSYDVRDRCRFLRNLMFNTEILSQHMEEIFMS 536
Query: 398 KKLGVK--SNAVRPPSVLDILPVKMHT-KESTLEQSNNEEDFQ-EDLQETQDYVEDDNLQ 565
KK + S+ P S +L + H E L+ S+ EED ED +E +D E+D +
Sbjct: 537 KKPAPELISSFKEPTSSDSLLRKEAHAPNELKLDDSDEEEDDDDEDEEEDEDEEEEDEDE 596
Query: 566 SVESEQ 583
E E+
Sbjct: 597 EDEEEE 602
>Z83122-9|CAB05598.1| 906|Caenorhabditis elegans Hypothetical
protein R11A5.1a protein.
Length = 906
Score = 33.1 bits (72), Expect = 0.25
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Frame = +2
Query: 224 KGAIKMYLFSKNVPSVIFVSLFLLANAQRTSNNNRDLEF-QELARQNKITKQILEA-FLQ 397
K A+K++L ++ I +F LA + + F + L +I Q +E F+
Sbjct: 487 KLAVKLWLVKRDDSEKIVQYVFQLARFDLSYDVRDRCRFLRNLMFNTEILSQHMEEIFMS 546
Query: 398 KKLGVK--SNAVRPPSVLDILPVKMHT-KESTLEQSNNEEDFQ-EDLQETQDYVEDDNLQ 565
KK + S+ P S +L + H E L+ S+ EED ED +E +D E+D +
Sbjct: 547 KKPAPELISSFKEPTSSDSLLRKEAHAPNELKLDDSDEEEDDDDEDEEEDEDEEEEDEDE 606
Query: 566 SVESEQ 583
E E+
Sbjct: 607 EDEEEE 612
>U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical
protein B0416.1 protein.
Length = 1203
Score = 31.5 bits (68), Expect = 0.76
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +2
Query: 260 VPSVIFVSL---FLLANAQRTSNNNRDLEFQELARQNKITKQILEAFLQKKLGVKSNAVR 430
+P ++ +SL FL+A S N+DL FQ + + + K+I E KK K N
Sbjct: 782 IPVLVLLSLVIYFLIAMVTGLSQANQDLSFQLMVERTEEKKKIFELAGGKKKKSKDNTFG 841
Query: 431 PPSVLDILP 457
+LP
Sbjct: 842 KQKPKQLLP 850
>Z79639-4|CAB01917.2| 254|Caenorhabditis elegans Hypothetical
protein F54E4.3 protein.
Length = 254
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 497 NNEEDFQEDLQETQDYVEDDNLQSVESEQ 583
NN+E+ +E++ T D +++NL+ +SEQ
Sbjct: 201 NNDEESKEEVALTSDAQDEENLEQQQSEQ 229
>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
protein F29G6.3c protein.
Length = 1453
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +2
Query: 431 PPSVLDILPVKMHTKESTLEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFLDSIE 610
PP + + +K H L+Q ++ + +++TQ V D+ + S S+ I++ D
Sbjct: 507 PPPLSPVFEMKKHEHHKHLDQHHHHKHQDVVVEQTQFQVGDNFISSSSSKAIENHYDVPF 566
Query: 611 GMYSI 625
Y I
Sbjct: 567 DSYEI 571
>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
protein F29G6.3b protein.
Length = 1785
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +2
Query: 431 PPSVLDILPVKMHTKESTLEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFLDSIE 610
PP + + +K H L+Q ++ + +++TQ V D+ + S S+ I++ D
Sbjct: 507 PPPLSPVFEMKKHEHHKHLDQHHHHKHQDVVVEQTQFQVGDNFISSSSSKAIENHYDVPF 566
Query: 611 GMYSI 625
Y I
Sbjct: 567 DSYEI 571
>Z49911-6|CAA90132.1| 831|Caenorhabditis elegans Hypothetical
protein M28.8 protein.
Length = 831
Score = 29.5 bits (63), Expect = 3.1
Identities = 22/92 (23%), Positives = 36/92 (39%)
Frame = +2
Query: 269 VIFVSLFLLANAQRTSNNNRDLEFQELARQNKITKQILEAFLQKKLGVKSNAVRPPSVLD 448
+ F S+ LL + N+ DL +N T + +KLG K + VRP L
Sbjct: 679 LFFQSILLLLVYRWLRTNSDDLAMYNYRDKNDSTSKYSGT---RKLGGKKDQVRPTEELW 735
Query: 449 ILPVKMHTKESTLEQSNNEEDFQEDLQETQDY 544
P+ T + Q + D+ + +Y
Sbjct: 736 ATPILSSTSNTETRQLPRVRPYDMDIVQPSEY 767
>Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical
protein F35E2.5 protein.
Length = 575
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = +2
Query: 389 FLQKKLGVKSNAVRPPSVLDILPVKMHTKESTLEQSNNEEDFQEDLQETQDYVEDDNLQS 568
F+ + + S ++PP V ++P + ST +E D++E ++ + +E D+L
Sbjct: 498 FIDQPSSISSENIQPPEVSPVIPQRTVYLSST--PMPDEVDYEEFMEFKMEDIEKDHLDE 555
Query: 569 VES 577
S
Sbjct: 556 SSS 558
>U53154-12|AAC25847.2| 380|Caenorhabditis elegans Serpentine
receptor, class w protein127 protein.
Length = 380
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -3
Query: 414 FTPSFFWRKASRICFVILF*RASSWNSRSRLLFDVR*ALANKNNETKITLGTFFEN 247
F S F+ + F+I +S +N ++LL NKNN T I+L F N
Sbjct: 315 FVFSMFFSANTMSHFIICLLISSQYNDTAKLLCTCCCCARNKNNNTSISLTRTFTN 370
>AL132862-8|CAB60538.2| 284|Caenorhabditis elegans Hypothetical
protein Y73F8A.13 protein.
Length = 284
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 579 SRSTRSWIQLKACIRFIK--KQNFKQWHLKKK 668
+ S WIQ +C RFIK + N K H KKK
Sbjct: 138 NESEMPWIQCLSCSRFIKNVRGNTKTIHTKKK 169
>AF099919-13|AAC68798.1| 636|Caenorhabditis elegans Hypothetical
protein F40G9.1 protein.
Length = 636
Score = 28.7 bits (61), Expect = 5.3
Identities = 24/111 (21%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Frame = +2
Query: 227 GAIKMYLFSKNVPSVIFVSLFLLANAQRTSNNNRDLEFQELARQNKITKQILEAFLQKKL 406
G +++L KNV +VIF+ + N + ++LA + +++L +
Sbjct: 24 GKFRIFL-EKNVKNVIFLQEIFEKSLFLCLKINGSNDKKQLANDVREAQKVLRTMQTRIS 82
Query: 407 GVKSNAVRPPSVLDILPVKMHTKESTLEQSNNEEDFQEDLQE-TQDYVEDD 556
+K+ PS+ D VK+H + + + + +E +E +D VE++
Sbjct: 83 DLKALGKDIPSLNDQKTVKIHVESHEKQMNFLQRKLKEGSEEIRKDIVEEE 133
>AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protein 4
protein.
Length = 741
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 410 VKSNAVRPPSVLDILPVKMHTK-ESTLEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQI 586
+ SN VR ++D PV + + +EQ N E+F + + Q+ DN+ S E +
Sbjct: 551 ITSNGVRNGKLVD--PVMREWRLDKPVEQVNTWEEFSDYATKVQECKLGDNVDSDEEDSE 608
Query: 587 DSFLDSIE 610
D D+++
Sbjct: 609 DKKPDTLK 616
>Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical
protein ZK675.1 protein.
Length = 1405
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 485 LEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFL 598
L + E+D E +ET+DY E++ ++ + +D +L
Sbjct: 28 LNLAPEEDDLYETYEETEDYAENEPTGNILTRFLDQYL 65
>U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical
protein C50F2.2 protein.
Length = 1029
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 479 STLEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFLDSIEGMY 619
S + + +EDF +DL + E+D + + DSF+D ++ Y
Sbjct: 857 SPVTSTPRKEDFNDDLSGCLEEDEEDTENLLPQAKDDSFIDELDWNY 903
>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily assigned
gene nameprotein 278 protein.
Length = 1130
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/76 (21%), Positives = 37/76 (48%)
Frame = +2
Query: 350 ARQNKITKQILEAFLQKKLGVKSNAVRPPSVLDILPVKMHTKESTLEQSNNEEDFQEDLQ 529
+R+N+I K E ++QK K N + +++ K + EQS+ E + ++ Q
Sbjct: 893 SRENEIAKLHEEMYMQKTQNEKRNEEQSKLFQELMFEKEQLEAEKAEQSHIEAEVEQVFQ 952
Query: 530 ETQDYVEDDNLQSVES 577
++ + ++ +E+
Sbjct: 953 ADKESKWKEQIEDLEN 968
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 446 DILPVKMHTKESTLEQSNNEEDFQEDLQETQDYVEDDNLQSV 571
D+L H +S L+Q+ NE+ DL++ + ++D+N + V
Sbjct: 1124 DLLRKMEHDAQSMLKQAQNEQFRLTDLEKVRKALQDENQRLV 1165
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 446 DILPVKMHTKESTLEQSNNEEDFQEDLQETQDYVEDDNLQSV 571
D+L H +S L+Q+ NE+ DL++ + ++D+N + V
Sbjct: 1124 DLLRKMEHDAQSMLKQAQNEQFRLTDLEKVRKALQDENQRLV 1165
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 446 DILPVKMHTKESTLEQSNNEEDFQEDLQETQDYVEDDNLQSV 571
D+L H +S L+Q+ NE+ DL++ + ++D+N + V
Sbjct: 884 DLLRKMEHDAQSMLKQAQNEQFRLTDLEKVRKALQDENQRLV 925
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 446 DILPVKMHTKESTLEQSNNEEDFQEDLQETQDYVEDDNLQSV 571
D+L H +S L+Q+ NE+ DL++ + ++D+N + V
Sbjct: 1124 DLLRKMEHDAQSMLKQAQNEQFRLTDLEKVRKALQDENQRLV 1165
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 28.3 bits (60), Expect = 7.1
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Frame = +2
Query: 356 QNKITKQILEAFLQKKLGVKSNAVRPPSVLDILPVKMHTKEST-LEQSNNEEDFQEDLQE 532
Q+ Q L+A ++ ++ P + + P +++E+ +E+ +E +F+ED Q
Sbjct: 644 QSSQNDQELQAISDQQEILEDVPKEEPIIEEDEPKYEYSQETIPVEELKDEVEFKEDQQS 703
Query: 533 TQDYVEDDNLQSVESEQIDSFLDSIEGMYSIY 628
T + +EDD ID+F+ + EG + Y
Sbjct: 704 TSNLLEDDT-------GIDNFVKNEEGAEAGY 728
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 410 VKSNAVRPPSVLDILPVKMHTKESTLEQSNNEEDFQEDLQETQDYVEDDNLQ---SVESE 580
V A+ PSV D + + + L+ +++++ ED+ + + +E+D + S E+
Sbjct: 627 VAPEAIPSPSVSDPIMPQSSQNDQELQAISDQQEILEDVPKEEPIIEEDEPKYEYSQETI 686
Query: 581 QIDSFLDSIE 610
++ D +E
Sbjct: 687 PVEELKDEVE 696
>AF038621-4|AAK71387.2| 1064|Caenorhabditis elegans Hypothetical
protein M116.5 protein.
Length = 1064
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/65 (23%), Positives = 33/65 (50%)
Frame = +3
Query: 504 KRISKKTYKKLKTTWRMTTYKV*NRSRSTRSWIQLKACIRFIKKQNFKQWHLKKKSVMAL 683
++IS+ Y++ K+ +R + + + +++ F+ QNFK+ L K ++
Sbjct: 799 EKISENYYRRSKSNFRGYYFSKKQSKKQCFFFSKIRIIKNFMTAQNFKKKILLKSQSLSS 858
Query: 684 VSCLN 698
SCL+
Sbjct: 859 FSCLS 863
>Z68114-10|CAA92157.2| 322|Caenorhabditis elegans Hypothetical
protein F17A2.13 protein.
Length = 322
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 446 DILPVKMHTKESTLEQSNNEEDFQE-DLQETQDYVEDDNLQSVESE 580
D+ + KES L+QS NEE+ ++ D+QE D E +N ++ E
Sbjct: 74 DVCDGPVFRKESFLKQSQNEEEEEKADVQENFD--EQENAKNENDE 117
>Z47069-2|CAA87337.1| 313|Caenorhabditis elegans Hypothetical
protein F36G3.2 protein.
Length = 313
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 488 LVYSLSCAF*QVIYPEPKEVSLHYSSRRVSSGE-KLLEFASLSYSDAPALGIRDL 327
L Y L C V++ + ++ H S+ R S E + + A L Y+D+P++ + L
Sbjct: 187 LYYKLDCVLGVVLFDQHHKIIAHISAVRTSHKEDNVFKIAPL-YADSPSIAMSAL 240
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 473 KESTLEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFLDSI 607
K + LE+++ E F+ D QET ++ED +S+ + + L +
Sbjct: 937 KRNELERAHRLETFRIDCQETVTWIEDKTRVLEDSDALTNDLSGV 981
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 473 KESTLEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFLDSI 607
K + LE+++ E F+ D QET ++ED +S+ + + L +
Sbjct: 937 KRNELERAHRLETFRIDCQETVTWIEDKTRVLEDSDALTNDLSGV 981
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 473 KESTLEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFLDSI 607
K + LE+++ E F+ D QET ++ED +S+ + + L +
Sbjct: 937 KRNELERAHRLETFRIDCQETVTWIEDKTRVLEDSDALTNDLSGV 981
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 473 KESTLEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFLDSI 607
K + LE+++ E F+ D QET ++ED +S+ + + L +
Sbjct: 937 KRNELERAHRLETFRIDCQETVTWIEDKTRVLEDSDALTNDLSGV 981
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 473 KESTLEQSNNEEDFQEDLQETQDYVEDDNLQSVESEQIDSFLDSI 607
K + LE+++ E F+ D QET ++ED +S+ + + L +
Sbjct: 937 KRNELERAHRLETFRIDCQETVTWIEDKTRVLEDSDALTNDLSGV 981
>AF040653-6|AAB95032.1| 508|Caenorhabditis elegans F-box b protein
protein 51 protein.
Length = 508
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 227 GAIKMYLFSKNVPSVIFVSLFLLANAQRTSN 319
G I +YL +N+ ++ F+SLF++ N +N
Sbjct: 254 GGIDIYLGQENIATLPFMSLFIIQNTLHWNN 284
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,096,972
Number of Sequences: 27780
Number of extensions: 268565
Number of successful extensions: 1043
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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