Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B06
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    28   0.091
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    24   2.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   2.0  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 28.3 bits (60), Expect = 0.091
 Identities = 19/83 (22%), Positives = 40/83 (48%)
 Frame = +2

Query: 350 ARQNKITKQILEAFLQKKLGVKSNAVRPPSVLDILPVKMHTKESTLEQSNNEEDFQEDLQ 529
           +R  + +K+   + + ++    S+    PS+L   P + H KE +    NN    Q+  +
Sbjct: 19  SRSRRYSKRFSSSIVDRR-SPSSSRSPSPSLLTSQPHQDHNKEKS---KNNHHCNQDTEK 74

Query: 530 ETQDYVEDDNLQSVESEQIDSFL 598
             Q  +E DN + V  ++ ++F+
Sbjct: 75  LNQLEIESDNSKEVNDKKEENFI 97



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 416 SNAVRP--PSVLDILPVKMHTKESTLEQSNNEEDFQED 523
           ++ +RP  P    +L VK   +E  +E++N+EE  Q+D
Sbjct: 278 NDILRPYVPEFKGVLDVK-DVEEGNVEETNSEETHQKD 314


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 416 SNAVRP--PSVLDILPVKMHTKESTLEQSNNEEDFQED 523
           ++ +RP  P    +L VK   +E  +E++N+EE  Q+D
Sbjct: 193 NDILRPYVPEFKGVLDVK-DVEEGNVEETNSEETHQKD 229


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 416 SNAVRP--PSVLDILPVKMHTKESTLEQSNNEEDFQED 523
           ++ +RP  P    +L VK   +E  +E++N+EE  Q+D
Sbjct: 512 NDILRPYVPEFKGVLDVK-DVEEGNVEETNSEETHQKD 548



 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 470 TKESTLEQSNNEEDFQEDLQETQDYVEDDNLQ 565
           T +S  EQ N EED  + ++E + Y E D ++
Sbjct: 154 TMKSKKEQ-NAEEDIVDPVEENETYDEFDTIR 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,414
Number of Sequences: 438
Number of extensions: 3689
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)