Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_B05
(707 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79639-6|CAB01919.3| 957|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z79639-5|CAD42645.2| 972|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z79598-9|CAB01869.3| 957|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z79598-8|CAD42646.2| 972|Caenorhabditis elegans Hypothetical pr... 39 0.003
AF519110-1|AAM74224.1| 957|Caenorhabditis elegans EOR-2B protein. 39 0.003
AF519109-1|AAM74223.1| 972|Caenorhabditis elegans EOR-2A protein. 39 0.003
AF502570-1|AAM74152.1| 972|Caenorhabditis elegans EOR-2 protein. 39 0.003
Z82266-4|CAB05180.1| 227|Caenorhabditis elegans Hypothetical pr... 30 1.9
AC006689-1|AAF39971.2| 257|Caenorhabditis elegans Hypothetical ... 29 4.3
Z92817-4|CAB07297.3| 633|Caenorhabditis elegans Hypothetical pr... 28 5.7
AC006662-5|AAF39894.1| 501|Caenorhabditis elegans Hypothetical ... 28 5.7
>Z79639-6|CAB01919.3| 957|Caenorhabditis elegans Hypothetical
protein C44H4.7b protein.
Length = 957
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +3
Query: 483 GDTVISKLDELN----LWKIDGKALLQKFIPMESN--GRVLHKCTCVYSGWNVDNRDNYY 644
G VI K D L +W++D + LLQKF P + R++++ + YSGW Y+
Sbjct: 627 GTYVICKADMLKEDCAVWRVDNQNLLQKFPPFRDSKANRLVYRSSSTYSGWCEQISSQYF 686
Query: 645 PITEILDRNPRTDS 686
+ + + R+++
Sbjct: 687 RVAVKIIKQTRSET 700
>Z79639-5|CAD42645.2| 972|Caenorhabditis elegans Hypothetical
protein C44H4.7a protein.
Length = 972
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +3
Query: 483 GDTVISKLDELN----LWKIDGKALLQKFIPMESN--GRVLHKCTCVYSGWNVDNRDNYY 644
G VI K D L +W++D + LLQKF P + R++++ + YSGW Y+
Sbjct: 642 GTYVICKADMLKEDCAVWRVDNQNLLQKFPPFRDSKANRLVYRSSSTYSGWCEQISSQYF 701
Query: 645 PITEILDRNPRTDS 686
+ + + R+++
Sbjct: 702 RVAVKIIKQTRSET 715
>Z79598-9|CAB01869.3| 957|Caenorhabditis elegans Hypothetical
protein C44H4.7b protein.
Length = 957
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +3
Query: 483 GDTVISKLDELN----LWKIDGKALLQKFIPMESN--GRVLHKCTCVYSGWNVDNRDNYY 644
G VI K D L +W++D + LLQKF P + R++++ + YSGW Y+
Sbjct: 627 GTYVICKADMLKEDCAVWRVDNQNLLQKFPPFRDSKANRLVYRSSSTYSGWCEQISSQYF 686
Query: 645 PITEILDRNPRTDS 686
+ + + R+++
Sbjct: 687 RVAVKIIKQTRSET 700
>Z79598-8|CAD42646.2| 972|Caenorhabditis elegans Hypothetical
protein C44H4.7a protein.
Length = 972
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +3
Query: 483 GDTVISKLDELN----LWKIDGKALLQKFIPMESN--GRVLHKCTCVYSGWNVDNRDNYY 644
G VI K D L +W++D + LLQKF P + R++++ + YSGW Y+
Sbjct: 642 GTYVICKADMLKEDCAVWRVDNQNLLQKFPPFRDSKANRLVYRSSSTYSGWCEQISSQYF 701
Query: 645 PITEILDRNPRTDS 686
+ + + R+++
Sbjct: 702 RVAVKIIKQTRSET 715
>AF519110-1|AAM74224.1| 957|Caenorhabditis elegans EOR-2B protein.
Length = 957
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +3
Query: 483 GDTVISKLDELN----LWKIDGKALLQKFIPMESN--GRVLHKCTCVYSGWNVDNRDNYY 644
G VI K D L +W++D + LLQKF P + R++++ + YSGW Y+
Sbjct: 627 GTYVICKADMLKEDCAVWRVDNQNLLQKFPPFRDSKANRLVYRSSSTYSGWCEQISSQYF 686
Query: 645 PITEILDRNPRTDS 686
+ + + R+++
Sbjct: 687 RVAVKIIKQTRSET 700
>AF519109-1|AAM74223.1| 972|Caenorhabditis elegans EOR-2A protein.
Length = 972
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +3
Query: 483 GDTVISKLDELN----LWKIDGKALLQKFIPMESN--GRVLHKCTCVYSGWNVDNRDNYY 644
G VI K D L +W++D + LLQKF P + R++++ + YSGW Y+
Sbjct: 642 GTYVICKADMLKEDCAVWRVDNQNLLQKFPPFRDSKANRLVYRSSSTYSGWCEQISSQYF 701
Query: 645 PITEILDRNPRTDS 686
+ + + R+++
Sbjct: 702 RVAVKIIKQTRSET 715
>AF502570-1|AAM74152.1| 972|Caenorhabditis elegans EOR-2 protein.
Length = 972
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +3
Query: 483 GDTVISKLDELN----LWKIDGKALLQKFIPMESN--GRVLHKCTCVYSGWNVDNRDNYY 644
G VI K D L +W++D + LLQKF P + R++++ + YSGW Y+
Sbjct: 642 GTYVICKADMLKEDCAVWRVDNQNLLQKFPPFRDSKANRLVYRSSSTYSGWCEQISSQYF 701
Query: 645 PITEILDRNPRTDS 686
+ + + R+++
Sbjct: 702 RVAVKIIKQTRSET 715
>Z82266-4|CAB05180.1| 227|Caenorhabditis elegans Hypothetical
protein F23B2.6 protein.
Length = 227
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +3
Query: 393 NKSDSSQSKDVPKHFHSGNFVLLKSDVKWDGDTVISKLDELNLWKIDGKALLQKFIPMES 572
N +++ S D+ + F G F L K V ++ + + ++ L K D L+QKF +
Sbjct: 86 NLAETVISSDLQELF--GAFNLHKVSVNFNENGGAAGTGDITLKKYDADRLIQKFAGVAL 143
Query: 573 NGRVLH 590
+G+V+H
Sbjct: 144 DGKVMH 149
>AC006689-1|AAF39971.2| 257|Caenorhabditis elegans Hypothetical
protein T22E7.2 protein.
Length = 257
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -3
Query: 684 SLCVDCDPVFRLWGNNCHGCQHSTQNTHMYICVKLFHLIPLG*ISVIMLCHQFSTSSVHQ 505
+ C+D +W NNC G ++ + ICV +F + G +SV++ + T+S +
Sbjct: 57 NFCIDDFDHHCVWLNNCIGGKNYRPFVVLVICVNVFSMFCFG-LSVVIF-FSWITNSDER 114
Query: 504 VLI 496
LI
Sbjct: 115 ALI 117
>Z92817-4|CAB07297.3| 633|Caenorhabditis elegans Hypothetical
protein W08G11.4 protein.
Length = 633
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Frame = +3
Query: 564 MESNGRVLHKCTCVYSGWNV------DNRDNYYPITEILDRNPRTDSKEI 695
ME NG++ + T Y G + +RD ++ E L+ NP + KE+
Sbjct: 440 MEMNGKLFDELTSTYKGERLREKQREKDRDAFWKKMEALELNPPAEGKEV 489
>AC006662-5|AAF39894.1| 501|Caenorhabditis elegans Hypothetical
protein H23L24.2 protein.
Length = 501
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +3
Query: 573 NGRVLHKCTCVYSG----WNVDNRDNYYPITEILDRNPRTDSKEI 695
N R+L + CVY+ WN N D PI D N + D + I
Sbjct: 65 NRRLLCRAVCVYAAGLDLWNSKNNDGKTPIEMTDDANIKRDLQSI 109
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,756,451
Number of Sequences: 27780
Number of extensions: 284511
Number of successful extensions: 919
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -