Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_B02
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.09 |||mitochondrial type II fatty acid synthase componen...    74   2e-14
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    29   0.82 
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    28   1.4  
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc...    27   2.5  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    27   3.3  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   5.8  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    25   7.6  

>SPAC4H3.09 |||mitochondrial type II fatty acid synthase
           component|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
 Frame = +3

Query: 231 KSRVLLVLQLYDKI-NPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERL 407
           + R+L V+  +DKI +P+++T  S F NDLGLDSLD VEV+MA+E+EF  +IPD DA+ +
Sbjct: 36  EKRILKVVSSFDKIQDPKKVTPTSTFANDLGLDSLDAVEVVMAIEEEFSIQIPDKDADEI 95

Query: 408 VRPKDIVQYI 437
               D + YI
Sbjct: 96  TSVGDAISYI 105


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 17/72 (23%), Positives = 33/72 (45%)
 Frame = +3

Query: 222 DLIKSRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAE 401
           DL+ + +     LY ++  ++      F     + SLD+   I+ M+   GFEI     E
Sbjct: 256 DLVTTTITFTPLLYAQLYQQRCKTFRPFHLPSDVHSLDYERAILGMKLSCGFEILYNSKE 315

Query: 402 RLVRPKDIVQYI 437
            + +  +I +Y+
Sbjct: 316 NVEKRTEIDEYL 327


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 234 SRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEF 371
           S+VLL LQ    I P  L  + + M +LG +  D+ E ++  + ++
Sbjct: 296 SQVLLTLQSVKDIEPPALWQEPNSMEELGKELKDNKEQLVKQDQKY 341


>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 167 WERETWYPQVQRWPSPHLRPYK 232
           WE + + P   RW   H +P+K
Sbjct: 156 WENDVYGPNEDRWDENHAQPHK 177


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -1

Query: 437 NVLDNVFWSNQSLCIT--IRYLKSKFIFHCH 351
           N LDNVF S + L  +  + YL+ +F FHC+
Sbjct: 64  NKLDNVFSSLEWLTKSDAVIYLEDQFHFHCY 94


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 173  RETWYPQVQRWPSPHLRPYKK 235
            +ETWY ++QRW    L  Y+K
Sbjct: 1296 KETWYEKLQRWEDA-LSAYEK 1315


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 518 VIVSKIQLVQNYEVYIFLLFINIFLVSNVLDNVFWSNQS 402
           ++ S + L  +Y   +FL+F+   +   V  NV+ S Q+
Sbjct: 308 ILQSALYLTSSYHFVLFLIFVEGLIGGTVYVNVYHSLQT 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,692
Number of Sequences: 5004
Number of extensions: 52790
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)