Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A23
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    25   8.4  
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...    25   8.4  
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...    25   8.4  

>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 451 NAKNKLFTE-FLIHRRIHRTSLKQYKVYSSRSHERCRA 341
           N +  LF++    H +IH  S    ++YS+ SH R R+
Sbjct: 310 NVRTTLFSDDSRFHSKIHTHSTPPSQMYSAASHFRYRS 347


>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 415 HRRIHRTSLKQYKVYSSRSHERCRAMCAN 329
           H+++    LK YKV    S +R R  C N
Sbjct: 95  HKKVELAVLKYYKVEDDGSVKRLRRECPN 123


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 415 HRRIHRTSLKQYKVYSSRSHERCRAMCAN 329
           H+++    LK YKV    S +R R  C N
Sbjct: 95  HKKVELAVLKYYKVEDDGSVKRLRRECPN 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,836
Number of Sequences: 5004
Number of extensions: 52518
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)