Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A23
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0163 - 6056959-6058989                                           29   5.0  
06_03_0778 - 24523780-24526353                                         28   6.6  
12_02_0526 - 20032206-20033106,20034853-20035181                       28   8.7  

>03_02_0163 - 6056959-6058989
          Length = 676

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 53  ARPTVYENLLRLWWLYLRINIYKEVILYRL-LCAFCRCAKW 172
           ARP     +L LWW      + KEVILY + L A  +  +W
Sbjct: 127 ARPAAV--VLALWWFLRNAEVRKEVILYNVALKALRKRRRW 165


>06_03_0778 - 24523780-24526353
          Length = 857

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 427 EFLIHRRIHRT-SLKQYKVYSSRSHERCRAMCANE 326
           EF+I +  + T +   YKVYS  + E+C  +C N+
Sbjct: 377 EFVIAKLPNTTWTASPYKVYSYTAEEQCGGLCLND 411


>12_02_0526 - 20032206-20033106,20034853-20035181
          Length = 409

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 473 SDPHSASMVTAVHDATNT-KNNICSSNNKKYCNRICLNIKNNRSQSIY 613
           S+  +A++ + + D +N+ KNN  S NN    +  C+++ N+ S  IY
Sbjct: 314 SNTTAATLSSNITDNSNSNKNN--SDNNNNISSSCCISLMNSSSNMIY 359


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,606,941
Number of Sequences: 37544
Number of extensions: 308259
Number of successful extensions: 647
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)