Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A23
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorte...    28   5.9  
Z82284-3|CAB05293.1|  350|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    28   7.9  

>L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 19 protein.
          Length = 683

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = +2

Query: 104 RINIYKEVIL---YRLLCAFCRCAKWQL 178
           R N+Y EVIL   YR   AF + A WQ+
Sbjct: 112 RFNLYPEVILAFLYRPFRAFAKSANWQI 139


>Z82284-3|CAB05293.1|  350|Caenorhabditis elegans Hypothetical
           protein T27E7.4 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 32  AAHVAPDARPTVYENLLRLWWLYLRINIYKEVILYRLL 145
           A+H  PD   ++Y   L  WWL    N +KE+I+  +L
Sbjct: 7   ASHTEPDLDVSIYTGQL-YWWLV--YNYFKELIIVPIL 41


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
            protein W09B6.1a protein.
          Length = 2054

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +2

Query: 530  NNICSSNNKKYCNRICLNIKNNRSQSIYS----CCLKTNYEQLIFVTIIINLTVF 682
            N +    NK    R+ L+ K    Q   S     CLKTN+ +    T +IN+++F
Sbjct: 1028 NKVVLKGNKLIVVRLSLDSKTFNQQCFSSEKFLDCLKTNFRKYCKKTDVINVSIF 1082


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,001,826
Number of Sequences: 27780
Number of extensions: 298946
Number of successful extensions: 672
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)