Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A22
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     27   1.5  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    27   1.5  
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    26   2.5  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   5.9  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   7.8  

>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +3

Query: 255 GFTFKQIIGNERKRK--YAEFYRTYDAEKE-FEEMRKK 359
           G T+  I    + RK  Y ++Y T+D  KE F+E++K+
Sbjct: 362 GRTYNVISSMSKARKLGYTDYYDTFDGFKETFDELKKQ 399


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 14  SDPSSLHGFLLIPLXXFLKSAV-LCRLC 94
           SDPSS +  LLIPL   L+  + L R+C
Sbjct: 141 SDPSSCNSQLLIPLQHLLRYPIHLARVC 168


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 207 VIKRNIIVALALSGVAGFTFKQIIGNER 290
           V  R IIV  A   VA FTF+Q+ G  +
Sbjct: 311 VFGRKIIVPKASGNVAWFTFEQLCGEPK 338


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 362 SIPILLNMNYHSVVLLLFCCE*CY 433
           S+ +    +YHS +  + CC  CY
Sbjct: 447 SLLVQYTKDYHSEIAQMLCCSLCY 470


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 303 AEFYRTYDAEKEFEEMRKKGLFQSC 377
           A+F+R Y+A K F  ++K  +   C
Sbjct: 856 AKFWRAYNARKTFRGLKKSVIALQC 880


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,443,535
Number of Sequences: 5004
Number of extensions: 23248
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)