Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A22
         (473 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X13238-1|CAA31624.1|   75|Homo sapiens cytochrome c oxidase subu...    69   6e-12
BT007007-1|AAP35653.1|   75|Homo sapiens cytochrome c oxidase su...    69   6e-12
BC000187-1|AAH00187.1|   75|Homo sapiens cytochrome c oxidase su...    69   6e-12
AF067637-1|AAC73061.1|   75|Homo sapiens cytochrome c oxidase su...    69   6e-12
AK056940-1|BAB71317.1|  421|Homo sapiens protein ( Homo sapiens ...    29   8.2  
AF431970-1|AAM44214.1|  421|Homo sapiens putative nucleoporin pr...    29   8.2  

>X13238-1|CAA31624.1|   75|Homo sapiens cytochrome c oxidase subunit
           VIc preprotein protein.
          Length = 75

 Score = 69.3 bits (162), Expect = 6e-12
 Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
 Frame = +3

Query: 177 KPQLRGLLNAVIKRNIIVALALS-GVAGFTFKQIIGNERKRKYAEFYRTYDAEKEFEEMR 353
           KP++RGLL   ++ ++ VA  LS GVA   +K  + ++RK+ YA+FYR YD  K+FEEMR
Sbjct: 8   KPRMRGLLARRLRNHMAVAFVLSLGVAAL-YKFRVADQRKKAYADFYRNYDVMKDFEEMR 66

Query: 354 KKGLFQS 374
           K G+FQS
Sbjct: 67  KAGIFQS 73


>BT007007-1|AAP35653.1|   75|Homo sapiens cytochrome c oxidase
           subunit VIc protein.
          Length = 75

 Score = 69.3 bits (162), Expect = 6e-12
 Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
 Frame = +3

Query: 177 KPQLRGLLNAVIKRNIIVALALS-GVAGFTFKQIIGNERKRKYAEFYRTYDAEKEFEEMR 353
           KP++RGLL   ++ ++ VA  LS GVA   +K  + ++RK+ YA+FYR YD  K+FEEMR
Sbjct: 8   KPRMRGLLARRLRNHMAVAFVLSLGVAAL-YKFRVADQRKKAYADFYRNYDVMKDFEEMR 66

Query: 354 KKGLFQS 374
           K G+FQS
Sbjct: 67  KAGIFQS 73


>BC000187-1|AAH00187.1|   75|Homo sapiens cytochrome c oxidase
           subunit VIc protein.
          Length = 75

 Score = 69.3 bits (162), Expect = 6e-12
 Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
 Frame = +3

Query: 177 KPQLRGLLNAVIKRNIIVALALS-GVAGFTFKQIIGNERKRKYAEFYRTYDAEKEFEEMR 353
           KP++RGLL   ++ ++ VA  LS GVA   +K  + ++RK+ YA+FYR YD  K+FEEMR
Sbjct: 8   KPRMRGLLARRLRNHMAVAFVLSLGVAAL-YKFRVADQRKKAYADFYRNYDVMKDFEEMR 66

Query: 354 KKGLFQS 374
           K G+FQS
Sbjct: 67  KAGIFQS 73


>AF067637-1|AAC73061.1|   75|Homo sapiens cytochrome c oxidase
           subunit VIc protein.
          Length = 75

 Score = 69.3 bits (162), Expect = 6e-12
 Identities = 34/67 (50%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
 Frame = +3

Query: 177 KPQLRGLLNAVIKRNIIVALALS-GVAGFTFKQIIGNERKRKYAEFYRTYDAEKEFEEMR 353
           KP++RGLL   ++ ++ VA  LS GVA   +K  + ++RK+ YA+FYR YD  K+FEEMR
Sbjct: 8   KPRMRGLLARRLRNHMAVAFVLSLGVAAL-YKFRVADQRKKAYADFYRNYDVMKDFEEMR 66

Query: 354 KKGLFQS 374
           K G+FQS
Sbjct: 67  KAGIFQS 73


>AK056940-1|BAB71317.1|  421|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32378 fis, clone SKMUS1000022, weakly similar to
           NUCLEAR PORE PROTEIN SEH1 HOMOLOG. ).
          Length = 421

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 16  RSFFTPWISPHPSXXFSQICXSLPPVPXCVIRH 114
           R FFTP  SP     +S     LPP P  ++ H
Sbjct: 357 RYFFTPLDSPRAGSRWSSYAQLLPPPPPPLVEH 389


>AF431970-1|AAM44214.1|  421|Homo sapiens putative nucleoporin
           protein SEH1B protein.
          Length = 421

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 16  RSFFTPWISPHPSXXFSQICXSLPPVPXCVIRH 114
           R FFTP  SP     +S     LPP P  ++ H
Sbjct: 357 RYFFTPLDSPRAGSRWSSYAQLLPPPPPPLVEH 389


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,691,353
Number of Sequences: 237096
Number of extensions: 864488
Number of successful extensions: 1959
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1959
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4156838854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)