Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_A20
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    34   0.022
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    30   0.47 
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    28   1.9  

>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 34.3 bits (75), Expect = 0.022
 Identities = 22/105 (20%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
 Frame = +3

Query: 486 IAGCLMFALAPTRQWFYSAPLFNIFSFTGLTAIRSIATKSVPTEEVAKLSALIGVTESLA 665
           ++  ++ A+A +    ++A +    S   +  ++SIA   V +E   ++ A   V E++A
Sbjct: 533 LSAAVLLAVAKSDVALFTAVIIQAISNMVVPCVQSIALNGVQSEYNGRVLAAFAVFEAVA 592

Query: 666 PSIYMPASSYIYMSTIE-TFPGAFYLFDAALTVVXLCLFGMIYIL 797
             I  P  +++Y  +++ ++P   +   A   V+  C F +I+ +
Sbjct: 593 LIIRGPIYAFVYTESMKVSYPNMIFFLSA---VIYGCCFIIIFFM 634


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 508 ANMRHPAILLTPAKAPIMLSWTFIRLLSTNIQNMVPKRPTTILIVP 371
           AN ++P I  TP  +    SW   +  +    N++P  PTT  I+P
Sbjct: 258 ANSQYPIIAATPLNSQTQASWV-AQPENQAYANLIPSPPTTSQILP 302


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +3

Query: 384 IVVGLLGTIFCILV--LSKRMNVQDSI-IGALAGVSRIAGCLMFAL 512
           +V+G LG +FC     L K + V D++ I A  GV  + G ++ AL
Sbjct: 311 VVIGALGAVFCYAATYLKKIIRVDDALDIFAEHGVGGMVGNILTAL 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,126,809
Number of Sequences: 5004
Number of extensions: 60313
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)